CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:75..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.634e-44
Identity = 85/183 (46.45%), Postives = 120/183 (65.57%), Query Frame = -2
Query:  264 KQEKMIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFF 812
            KQ+     F +K KQ   + +       K+ +  ELR  +DI E+ +P  C+++F +  +D++NF +SI P +G Y   TF FT  +   YP++ PKV C T VYHPNIDLEG+VCLNILR+DW PVLNI T+I+GL  LF +PN +DPLN +AA ++ DN K FE+NVR+++ GGY+    F
Sbjct:   52 KQKSKDSYFSLKTKQSSESGS-------KRANPAELRAQKDIDEMEVPTGCAVSFKD-TNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQF 226          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.118e-37
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = -2
Query:  279 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCS---ITFPNGKDDLMN--FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 800
            M+KL ++++K+++  EN++   P    SA  +RL RD+  L+LP T +   IT P+  D   +   EV +RPDEGYY  G+  F    + +YP E PKV C  K++HPNIDL+GNVCLNILREDW P L++ +II GL  LF +PN  DPLN +AA +L +  K F   VR  M+GG +
Sbjct:    1 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 177          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.503e-36
Identity = 84/185 (45.41%), Postives = 112/185 (60.54%), Query Frame = -2
Query:  264 MIKLFKVKE-KQRENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCS---ITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFF 800
            M+KL ++++ KQ++ A+NA    K      S  +LRL +DI EL LP T     I+  N K+  M+  + I PDEG+Y GG F FT      YP + PKV C  K++HPNID  G +CLNILREDW P L++  I+ GL  LF +PN  DPLN EAA VL  +   F + VR AM+G  VG T++
Sbjct:    1 MLKLRQLQQQKQQQLAKNAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKE--MSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVRLAMSGAMVGSTYY 183          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.504e-34
Identity = 79/184 (42.93%), Postives = 116/184 (63.04%), Query Frame = -2
Query:  267 MIKLFKV-KEKQRENAENANGKTPVKKQSAG---ELRLHRDISELNLPKTCSI-TFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV-GQTF 800
            M+KL ++ KEKQR+ A+    + P + +SA    +LR+ +D++ L LP T ++ T   G ++ +   +S  P+EG Y GG F F+      YP E P VKC   +YHPNID  GN+CLN+LREDW PV+++ T++ GL  LF +PN  DPLN +AA  +  +P  FE+NV+  M GG++ GQ F
Sbjct:    1 MLKLRQLQKEKQRQAAQ---AQAPAQGRSAASPAQLRVEKDLATLELPTTVTLDTKCLGSENKVYLRIS--PEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQATMMGGHLDGQVF 179          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 68/183 (37.16%), Postives = 106/183 (57.92%), Query Frame = -2
Query:  252 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 800
            M+KL  + E + +  E    +T  +      +RL +D+  ++L +          ++ M   ++I+PD GYY GGT+ F   +   YP E P VKC  ++YHPNID++GNVCLN+LREDW P L+I +II G+  LF +PN  DPLN +AA  L ++P  FE+ V  ++ G  +   ++ + I
Sbjct:    1 MLKLRALAEAKAKAKEGQGQETTPQVIKPSLIRLKKDLENIDLSEQICEYTTYLDENPMRVNLAIKPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRFENKVNHSLRGNNIDGVWYDKII 183          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 63/156 (40.38%), Postives = 93/156 (59.62%), Query Frame = -2
Query:  348 QRENAENANGKTPVKKQSAG------ELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 770
            +RE    A G+TP     A       +  L ++++EL  NLP TC +TFP+ ++ L +F+++I PDEGYY+GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN +AA
Sbjct:    9 KREEGVRA-GRTPAGSNDAAHRVSIRDRLLIKEVAELEANLPSTCKVTFPD-ENKLCHFQLAISPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAA 162          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = -2
Query:  348 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 752
            +A+     ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   20 SASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = -2
Query:  348 ANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 749
            A      ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   21 ATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = -2
Query:  348 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 752
            +A+     ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   20 SASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  348 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAA 728
            ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EAA
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVNFPD-PNKLHYFQLTVIPDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAA 162          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC12_DICDI2.634e-4446.45NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_YEAST3.118e-3745.81NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_CANGA4.503e-3645.41NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_ASHGO5.504e-3442.93NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC12_KLULA1.771e-3237.16NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBE2F_DANRE2.318e-2440.38NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2F_RAT1.661e-2240.28NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2F_HUMAN1.661e-2240.56NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UB2FA_MOUSE1.661e-2240.28NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_CHICK2.833e-2241.18NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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