CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.079e-13
Identity = 47/154 (30.52%), Postives = 74/154 (48.05%), Query Frame = -2
Query:  279 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 737
            TP KK      RL RD   L+      I+     D+LM +   I  P +  +  GTF         YP++ P VK  +K++HPN+   G +CL+IL+  W P  ++  I+  +  L   PN   P N EAA++ R+N K +   V+  +   ++
Sbjct:    3 TPSKK------RLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASWL 150          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.079e-13
Identity = 43/153 (28.10%), Postives = 75/153 (49.02%), Query Frame = -2
Query:  282 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 737
            TP K+      RL RD   +       ++     D++M++  V I P +  +  GTF    Q    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++++I+  +  L   PN   P N EAA + +D+   +   VR  +   +
Sbjct:    3 TPAKR------RLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSW 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  303 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 650
            FPN ++DL + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L+ DW   L I  ++  +  L   PN E  LN EA  +L +N + + +  R
Sbjct:   34 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  303 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 650
            FPN ++DL + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L+ DW   L I  ++  +  L   PN E  LN EA  +L +N + + +  R
Sbjct:   34 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 49/154 (31.82%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  315 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 767
            R+ AE + G  + PV K      RL +++  L +     I+     D+L  +  +I    G  Y    +  + +    YP+ AP VK  T  YHPN+D +GN+CL+IL+E W  + ++ TI+  +  L  +PN + PLN  AA + + NP  F+
Sbjct:   17 RKGAEPSGGAARGPVGK------RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = -2
Query:  303 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 647
            P+G  +LMN E +I   +G  + GG F         YP   PK K +  ++HPN+   G VCL+IL E  DW+P + I  I+ G+  L  +PN +DP   EA  +   +   +E  VR
Sbjct:   32 PDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.409e-13
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = -2
Query:  303 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 647
            P+G  +LMN+E +I   +G  + GG F         YP   PK K +  ++HPN+   G VCL+IL E  DW+P + IN +  G+  L  +PN ++P   EA  +   N   +E   R
Sbjct:   32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13
Identity = 40/143 (27.97%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  294 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 719
            +A   RL RD   +       ++     D++M +  V I P +  +  GTF    Q    YP++ P+VK  ++++HPN+   G +CL+IL+  W P  ++  ++  +  L   PN   P N EA+ + +DN + +   VR  +
Sbjct:    3 TAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            RL ++ S+L       I      D+L ++   ++ P +  Y GG F F+ +    YP + P ++  T++YHPN D EGNVCL IL++  +KP + + +++  +  L  +PN +DPL    A   R++   F+   R
Sbjct:   11 RLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  303 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 650
            FPN ++DL + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L+ DW   L I  ++  +  L   PN E  LN EA  +L +N + + +  R
Sbjct:   34 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC2_USTMA1.079e-1330.52Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_DEBHA1.079e-1328.10Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2S_HUMAN1.409e-1334.19Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN1.409e-1334.19Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBE2C_HUMAN1.409e-1331.82Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC9_PAGMA1.409e-1335.59SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MESAU1.409e-1334.75SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC2_TRIHA1.841e-1327.97Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC14_SCHPO1.841e-1330.88Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2S_RAT2.404e-1334.19Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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