CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  303 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 650
            FPN ++DL + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L+ DW   L I  ++  +  L   PN E  LN EA  +L +N + + +  R
Sbjct:   34 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = -2
Query:  291 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 719
            S+   R+  D+ +L L     +T  N  D++  F V    P E  Y GG +    ++   YP ++P +    +++HPNID L G+VCL+++ + W P+ + IN     L  L   PN  DPLN EAAA+L   P  + + VR  +A
Sbjct:    2 SSPRRRIETDVMKL-LMSDYEVTLVN--DNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIA 144          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  303 FPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 650
            FPN ++DL + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L+ DW   L I  ++  +  L   PN E  LN EA  +L +N + + +  R
Sbjct:   34 FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  315 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 767
            R+ AE + G  + PV K      RL +++  L +     I+     D+L  +  +I    G  Y    +  + +    YP+ AP VK  T  YHPN+D +GN+CL+IL++ W  + ++ TI+  +  L  +PN + PLN  AA + + NP  F+
Sbjct:   17 RKGAEPSGGAARGPVGK------RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  315 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 767
            R+ AE + G  + PV K      RL +++  L +     I+     D+L  +  +I    G  Y    +  + +    YP+ AP VK  T  YHPN+D +GN+CL+IL++ W  + ++ TI+  +  L  +PN + PLN  AA + + NP  F+
Sbjct:   17 RKGAEPSGGAARGPVGK------RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  303 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 635
            D +  F V    P +  Y GG +    ++   YP+++P V   TK+YHPN+D + G+VCL+++ + W P+ + +N     L  L   PN  DPLN EAAA++  +   +E  V+
Sbjct:   27 DGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVK 140          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+++++S L       I     ++D+ + +V I   EG  Y  G F     +   +P   PK    TK++HPN+   G +C+N+L++DWK  L I  ++  +  L   PN E  LN EA  +L +N + + S  +
Sbjct:   15 RVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAK 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.101e-13
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            RL RD   +       ++     D+++ +  V I P E  +  GTF    Q    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++  I+  +  L   PN   P N EA+ + +D+ + +E  VR
Sbjct:    8 RLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.101e-13
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +  V I P +  +  GTF         YP++ P VK  + ++HPN+   G +CL+IL+  W P  ++  I+  +  L   PN   P N EAA + R+N K +   VR+ +
Sbjct:    8 RLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  330 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 704
            R+ +++ ELN      IT    ++D+ N E  +    G  Y GG F     +S  +P   PK    TK++HPN+  +G +C+N L++DW   L +  I+  +  L   PN E  LN +A+ +L +N
Sbjct:   13 RVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLEN 138          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2S_MOUSE2.404e-1334.19Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBC8_SCHPO2.404e-1333.56Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UB2SA_XENLA2.404e-1334.19Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2C_MACFA3.140e-1331.17Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN3.140e-1331.17Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC5_ARATH3.140e-1334.21Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UB2SC_XENLA3.140e-1329.63Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC2_YARLI4.101e-1329.63Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_SCHPO4.101e-1329.71Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBE2S_DICDI5.356e-1331.75Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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