CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 5.356e-13
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = -2
Query:  309 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESN 602
            PD+  Y    F       P YP + P +K  TK+YHPN+D  G +CL I+  E+WKP      ++  L  L  +PN  +PL  + A +L  NP+LF  N
Sbjct:   41 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKN 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 48/154 (31.17%), Postives = 77/154 (50.00%), Query Frame = -2
Query:  315 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 767
            R+ AE   G  + PV K+   EL +     +  +       FP   D+L  +  +I    G  Y    +  + +    YP+ AP VK  T  YHPN+D +GN+CL+IL++ W  + ++ TI+  +  L  +PN + PLN  AA + + NP  F+
Sbjct:   17 RKGAEPCGGAARGPVGKRLQQELMILMTSGDKGIS-----AFPES-DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.995e-13
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFE-VSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +  V I P +  +  GTF         YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++  I+  +  L   PN   P N EA+ + RDN K +   VR  +
Sbjct:    8 RLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  303 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 602
            P +  Y GG +    +++  YP+++P +    K+YHPN+D + G+VCL+++ + W P+ + +N     L  L   PN  DPLN EAA+++  +   +E+ V+
Sbjct:   39 PKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVK 140          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = -2
Query:  348 RLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 704
            RL  ++ +L    T SI+ FP   +DL  +   I  P +  Y G  F  + +    YP   P +K  + ++HPN+D  GN+CL+IL+E W  V N+ TI+  L  L  +PN   PLN  AA
Sbjct:   12 RLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAA 132          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +   I  P +  Y  GTF    +    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++ +I+  +  LF  PN   P N EAA + +D+   +   V+  +
Sbjct:    8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +   I  P +  Y  GTF    +    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++ +I+  +  LF  PN   P N EAA + +D+   +   V+  +
Sbjct:    8 RLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +   I  P +  Y  GTF    +    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++ +I+  +  LF  PN   P N EAA + +D+   +   V+  +
Sbjct:    8 RLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.193e-12
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  294 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 704
            RL RD   +       ++     D++M +   I  P +  Y  GTF    +    YP++ P VK  ++++HPN+   G +CL+IL+  W P  ++ +I+  +  LF  PN   P N EAA + +D+   +   V+  +
Sbjct:    8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12
Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = -2
Query:  303 LRLHRDISELNLPKTCSITFP------NGKDDLMNF---EVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL----REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 707
            LR+ +++  L        +FP      NG  D   F   +  I  P++  Y  G F    Q+   YP + P V   T +YHPNID  G +CL+IL    +  W+P LNI+T++  +  L ++PN +D L  E +   + N + F+   R
Sbjct:    9 LRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAR 157          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2L6_HUMAN5.356e-1337.37Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBE2C_MOUSE6.995e-1331.17Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBC2_EMENI6.995e-1329.71Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC4_WHEAT9.136e-1332.35Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC11_YEAST9.136e-1336.36Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC2_YEAST1.193e-1228.26Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA1.193e-1228.26Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_CANGA1.193e-1228.26Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO1.193e-1228.26Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC37_ARATH1.558e-1230.87Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
back to top