CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:75..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  303 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  303 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  303 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = -2
Query:  333 AENANGKTPVKKQSAGELRLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRD 758
            +++++   PVK   A   RLH+++  L +     I+ FP+G++          P    Y G T+  +      YP+ AP VK  T  +HPN+DL+G +CL+IL++ W  + ++ TI+  +  L  +PN E PLN +AA +  D
Sbjct:   18 SKHSDDSMPVKDNHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWND 160          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  303 LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED------WKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAAAVLRDNPKLFESNVR 629
            L   E+++ P EG Y GG F F   V P Y +  P VKC TKV+HPNI+ +G++CL+ILR++      W+P  N+  +++GL  LF    ++ D LN +AA +   N + F   VR
Sbjct:   58 LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVR 173          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  303 SAGELRLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 719
            +A   RL RD   L       I+  P   + LM   V   PD+  + G TF  + Q S  YP++AP VK  +K++HPN+  +G++CL+IL+  W P+ +I  I+  +  L   PN   P N E+A + R+N + +   V+
Sbjct:    3 TAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVK 142          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 46/137 (33.58%), Postives = 79/137 (57.66%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+++++++L    P +CS   P G +DL +++ +I  P +  Y GG F         YP + PKV   T++YHPNI+  G++CL+ILR+ W P L I+ ++  +  + T PN ++PL  E A V + +   +E+  R
Sbjct:    5 RINKELTDLGRDPPSSCSAG-PVG-EDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+ +++S+L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PK+   TK+YHPNI+  G++CL+ILR  W P L ++ ++  +  L   PN +DPL  + A + + + + +  + R
Sbjct:    5 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+ +++S+L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PK+   TK+YHPNI+  G++CL+ILR  W P L ++ ++  +  L   PN +DPL  + A + + + + +  + R
Sbjct:    5 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2D2_MOUSE1.232e-1734.31Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.232e-1734.31Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.232e-1734.31Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBE2C_DROME1.609e-1732.17Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC12_CAEEL1.609e-1739.66NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2D2_PIG1.609e-1736.51Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC2_DICDI2.101e-1733.57Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC1_COLGL2.101e-1733.58Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D1_MOUSE2.101e-1733.58Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.101e-1733.58Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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