CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+ +++S+L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PK+   TK+YHPNI+  G++CL+ILR  W P L ++ ++  +  L   PN +DPL  + A + + + + +  + R
Sbjct:    5 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  303 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+H+++++L  + P  CS   P G +D+ +++ +I  P++  Y GG F  T      YP + PKV+  T++YHPN++  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + +   +    R
Sbjct:    5 RIHKELNDLAQDPPAQCSAG-PVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  303 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+H+++++L  + P  CS   P G +D+ +++ +I  P++  Y GG F  T      YP + PKV+  T++YHPN++  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + +   +    R
Sbjct:    5 RIHKELNDLAQDPPAQCSAG-PVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+ +++ +L    P  CS   P G DDL +++ +I  P E  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIQKELQDLGRDPPAQCSAG-PVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAR 139          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 46/126 (36.51%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  303 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+++++ +L    P  CS   P G DDL +++ +I  P +  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RINKELQDLGRDPPAQCSAG-PVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 139          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2D1_BOVIN2.101e-1733.58Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT2.101e-1732.85Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.101e-1732.85Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC2_CAEEL4.681e-1735.04Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_RAT4.681e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB4.681e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE4.681e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA4.681e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN4.681e-1736.51Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UBCD1_DROME7.985e-1734.31Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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