CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:75..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  348 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 704
            R+ +++++L    P  CS   P G DDL +++ +I  P++  Y GG F  T      YP + PKV   TK+YHPNI+  G++CL+ILR  W P L ++ ++  +  L   PN +DPL  E A
Sbjct:    5 RIQKELTDLQRDPPAQCSAG-PVG-DDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIA 124          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.323e-16
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = -2
Query:  348 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 704
            R+ ++  +L       IT     D+L  F+V+I  P++  Y  G F     +   YP EAPKV+  TK+YHPNID  G +CL++L+ +W P L I T++  +  L   PN  DPL ++ A
Sbjct:    7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.323e-16
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+ ++I  L       I     +D+L  F++++  P +  Y GG F     +   YP   P V+  TK+YHPN+D  G +CL+ L++DW P L I T++  +  L   PN +DPL+++ A + ++N     +N R
Sbjct:    6 RIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAR 140          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 45/126 (35.71%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  336 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 704
            R+++++S+L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+   ++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + +
Sbjct:    5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  294 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 737
            TP +K      RL RD   L       I+     +++M +   I  PD+  + GGTF  + Q S  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  I+  +  L   PN   P N EAA +  +N + +   VR  +
Sbjct:    3 TPARK------RLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 46/149 (30.87%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  294 TPVKKQSAGELRLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 737
            TP +K      RL RD   L       I+  P+  +  +   V   PD+  + GGTF  T Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  I+  +  L   PN   P N EAA +  +N + +   VR  +
Sbjct:    3 TPARK------RLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVV 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = -2
Query:  327 ENANGKTPVKKQSAGEL---------RLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNP 755
            +N N  T  K  S+  +         RL  ++  L +  T  I+ FP+   +L+++  +I  P + YY G  F  +      YP+  P +   + ++HPN+D+ GN+CL+IL++ W  V N+ TI+  L  L  +PN   PLN +AA +   +P
Sbjct:    6 QNQNPHTNSKNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDP 159          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.153e-15
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  324 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPK 704
            R+ ++   L       I+     D+   F+V+I  P +  + GG F     ++  YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N K
Sbjct:    7 RIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEK 134          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  330 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 704
            R+ ++   L       I+    +D++  F V I  P +  Y GG F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I T++  +  L + PN +DPL+   A   + N
Sbjct:    9 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSN 134          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.967e-15
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  330 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 602
            P +  + GGTF     +   YP  APKV+  TK+YHPN+D  G +CL+IL++ W P L I T++  +  L + PN +DPL ++ A   + N
Sbjct:   42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2D4_HUMAN1.043e-1637.70Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC13_YEAST2.323e-1636.67Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO2.323e-1631.85Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UB2D3_BOVIN3.034e-1635.71Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_MEDSA6.759e-1630.87Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_WHEAT8.828e-1630.87Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC11_SCHPO8.828e-1630.52Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2N_DICDI1.153e-1534.38Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC35_ARATH1.506e-1534.92Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_MACFA1.967e-1539.56Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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