CV884755

Overview
NameCV884755
Unique NameCV884755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.761e-15
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  291 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 602
            PD   Y GG F  + +    YP + PK   KT +YHPNI+ EG++C+NIL++ W P L +  ++  +  L  +PN +DPL  E   + ++N   F+   R   A
Sbjct:   46 PDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTA 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.761e-15
Identity = 40/113 (35.40%), Postives = 70/113 (61.95%), Query Frame = -2
Query:  303 DDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED-WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 635
            +++  ++V+I+ P+   Y    F    ++S  YP+ +PKVK  T + H N++ +G++CLNIL++D W   LNI +II+ +  L  QPN EDP N E A++ R++   ++  +R
Sbjct:   34 ENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIR 146          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  300 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL----REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 704
            RL R++  LN      +     + ++ +    I    G  Y GG F     V   YP E PK++  T +YHPNID  G +CL+IL    +  W+P LNI+T++  +  L ++PN +DPL  + ++  + N  +F SN ++
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKK 145          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  294 DDLMNFEVS-IRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 635
            +D+  +EV  I P +  Y GG F         YP + PK+K  ++++HPNID EGNVC++IL              E W PV  + TI+  +  + T PN+E P N +AA + R+N   F+  V + +
Sbjct:   31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 158          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 44/154 (28.57%), Postives = 78/154 (50.65%), Query Frame = -2
Query:  279 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 737
            TP KK      RL  D   L       I+     +++M++   I  P++  + GGTF  T   +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L   PN + P N EAA +  +N + +   V   +   YV
Sbjct:    3 TPAKK------RLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSYV 150          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            R+++++S L       I     ++D+ + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L++DWK  L I  ++  +  L   PN E  LN EA  +L +N + + S  R
Sbjct:   15 RVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  303 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 704
            ++++++S L       I     ++D+ + +VSI   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L++DWK  L I  ++  +  L   PN E  LN EA  +L +N + + S  R
Sbjct:   15 QVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 41/143 (28.67%), Postives = 73/143 (51.05%), Query Frame = -2
Query:  279 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 704
            RL RD   L   P T     P   + ++   V   P +  +  GTF  T + +  YP++ P V+  +KV+HPN+  +G +CL+IL+  W P  +++ I+  +  L + PN   P N  AA + ++N + +E  V+  +   ++
Sbjct:    8 RLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSFI 150          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = -2
Query:  303 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 647
            P+G  +LMN+E +I   +G  + GG F         YP   PK K +  ++HPN+   G VCL+IL E  DW+P + I  I+ G+  L  +PN +DP   EA  +   N   +E  VR
Sbjct:   32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CV884755 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = -2
Query:  303 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 647
            P+G  +LMN+E +I   +G  + GG F         YP   PK K +  ++HPN+   G VCL+IL E  DW+P + I  I+ G+  L  +PN +DP   EA  +   N   +E  VR
Sbjct:   32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of CV884755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC31_ARATH9.761e-1535.58Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC1_MIMIV9.761e-1535.40Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBE2T_XENLA1.665e-1432.14Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC7_CAEEL1.665e-1434.38Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC3_ARATH1.665e-1428.57Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UB2SB_XENLA1.665e-1431.11Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_RANCA2.174e-1431.11Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBCD6_DROME2.174e-1428.67Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC9_XENTR2.174e-1436.44SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA2.174e-1436.44SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884755 ID=CV884755; Name=CV884755; organism=Citrus sinensis; type=EST; length=828bp
TTTATCTTCAAAGTTGCAGGCTTGCAGCATACCCCAATCGATTCACTTGA
AAATAAGGGAAATAATTTTGTTCTCAGCCAATATCACAAACACACAACAA
AGTTACAGCAGCATACAAACATTCTGACTCCCTTTGCATGATTCTTAGAA
TTTTTTGTCCCAACACATTACTAGAAATTGAAGCAGCCCTGCGACCAAAT
TTACAGCTCCTTACCTTCAAAGCAACATGCATTTCCAGGCAAAAGCAATT
ATATGCACCGAATGAAGAAGGTTTGCCCCACATATCCACCAGCCATTGCT
CTTCTAACATTGGATTCAAACAGTTTTGGGTTATCCCTTAAAACAGCTGC
TGCTTCATGATTGAGGGGATCCTCATAATTGGGTTGCGTGAAAAGATGGA
AGAGTCCATAAATGATGGTGTTTATATTCAGAACCGGTTTCCAGTCTTCT
CTTAAAATGTTGAGGCAGACGTTTCCCTCCAGGTCGATATTGGGGTGGTA
AACCTTTGTCTTGCATTTGACCTTTGGTGCCTCATGAGGGTAGATGGGAG
ATACTTGGAAAGTAAACACAAATGTACCACCTACATAATATCCTTCGTCA
GGCCTAATGGAAACCTCGAAGTTCATCAAGTCATCCTTGCCATTGGGAAA
TGTTATGCTGCAAGTTTTGGGTAGGTTCAGTTCACTGATGTCTCTATGAA
GACGCAATTCTCCAGCACTTTGCTTCTTGACAGGTGTCTTCCCATTGGCA
TTTTCGGCATTTTCCCTTTGCTTCTCCTTGACTTTGAACAGCTTAATCAT
TTTTTCCTGCTTAAGAGTTAAGCTGCAG
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