CV884754

Overview
NameCV884754
Unique NameCV884754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:16..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 50/137 (36.50%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  183 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R++R++++L    P +CS   P G DDL +++ +I  P +  Y GG F  +      YP + PKV   T++YHPNI+  G++CL+ILR+ W P L I+ ++  +  L T PN +DPL  E A V + +   +E + R
Sbjct:    5 RINRELADLGKDPPSSCSAG-PVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 45/135 (33.33%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  183 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+ +++ +L      S +     +D+ +++ +I  P +  Y GG F+ T    P YP + PKV  +TKV+HPN++  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +ES  R
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.439e-19
Identity = 46/135 (34.07%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  183 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+ +++ +L      S +     +D+ +++ +I  P E  Y GG F+ T    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +E+  R
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 48/138 (34.78%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  183 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 587
            R+ R++ ++    P  CS   P  ++D+ +++ +I  P +  Y GG F  +   S  YP + PKV  KTKVYHPNID +G++CL+IL+E W P    + ++  +  L T PN  DPL  E A + + +   +ES  ++
Sbjct:    5 RISRELRDMQRHPPANCSAG-PVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQK 141          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 44/135 (32.59%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  183 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+ +++ +L      S +     +D+ +++ +I  P +  Y GG F+ +    P YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ ++  +  L T PN +DPL  E A + + +   +E+  R
Sbjct:    5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  183 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+ +++S+L      S +     DDL +++ SI  P +  Y GG F  +      YP + PKV   TK+YHPNI+  GN+CL+IL++ W P L ++ ++  +  L T  N +DPL  E A + + +   +E+  +
Sbjct:    6 RIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAK 140          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  183 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+ +++S+L    P +CS   P G DDL +++ SI  P +  Y GG F  +      YP + PK+   TK+YHPNI+  GN+CL+IL++ W P L ++ ++  +  L T  N +DPL  E A + + +   +E+  R
Sbjct:    6 RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAR 140          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  183 RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+++++++L    P +CS   P G +DL +++ +I  P +  Y GG F         YP + PKV   T++YHPNI+  G++CL+ILR+ W P L I+ ++  +  + T PN +DPL  E A V +     +ES  R
Sbjct:    5 RINKELTDLGRDPPSSCSAG-PVG-EDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  183 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
BLAST of CV884754 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  183 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 584
            R+H+++++L  + P  CS   P G DD+ +++ +I  P++  Y GG F  T      YP + PKV   T++YHPNI+  G++CL+ILR  W P L I+ ++  +  L   PN +DPL  E A + + + + +    R
Sbjct:    5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR 139          
The following BLAST results are available for this feature:
BLAST of CV884754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC4_SCHPO5.696e-1936.50Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC28_ARATH5.696e-1933.33Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH7.439e-1934.07Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC12_ARATH9.716e-1934.78Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SOLLC2.165e-1832.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC5_YEAST2.827e-1832.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_YEAST3.692e-1835.04Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_MAGGR3.692e-1835.04Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D2_XENLA1.403e-1734.31Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.403e-1734.31Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010D06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884754 ID=CV884754; Name=CV884754; organism=Citrus sinensis; type=EST; length=900bp
GAGCCCTTATCAGAGGAGCACGCTTTCAGATTCCAACGCGACCAACAATA
ACAAATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTT
CAAAGTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGA
CACCTGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATC
AGTGAACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAA
GGATGACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATT
ATGTAGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCT
CATGAGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATAT
CGACCTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAAC
CGGTTCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACG
CAACCCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAG
GGATAACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTG
GATATGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCT
GGAAATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGG
CTGCTTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATG
CAAAGGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTG
TGATATTGGCTGAGAACAAAATTATTTCCCTTATTTTCAAGTGAATCGAT
TGGGGTATGCTGCAAGCCTGCAACTTTGAAAATTAAAAAAAAAAAAAAAA
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