CV884748

Overview
NameCV884748
Unique NameCV884748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1B_HUMAN (Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.208e-37
Identity = 80/206 (38.83%), Postives = 127/206 (61.65%), Query Frame = 1
Query:   25 FEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL---DTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633
            +    VL TVPL +L+ G+I+F P L ++K+ AI  LG G++ K+A+ FPY FW++ +   D FGH+   +S RG F +FY         +L++++AGEA     ++     + + +  L+ +++ +   VP+P +   TRW  DP+   +YS V  G SG+ YDI+AE +  G +FFAGEAT R +P T+ GA+LSG+RE +K+A
Sbjct:  619 YSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ--EVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-QGTVFFAGEATNRHFPQTVTGAYLSGVREASKIA 821          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: KDM1B_MOUSE (Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1B PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.608e-35
Identity = 79/201 (39.30%), Postives = 126/201 (62.69%), Query Frame = 1
Query:   40 VLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL---DTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 633
            VL TVPL +L+ G+I+F P L ++K+ AI  LG G++ K+A+ FPY FW++ +   D FGH+   +S RG F +FY   +     +L++++ GEA     +M     + + + IL+ +++ +   +PEP +   TRW  +P+   +YS V    SG+ YDI+AE +  G +FFAGEAT R +P T+ GA+LSG+RE +K+A
Sbjct:  629 VLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVFYDMDSQQS--VLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQ--EIPEPTKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEI-QGTVFFAGEATNRHFPQTVTGAYLSGVREASKIA 824          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.435e-25
Identity = 76/200 (38.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   13 GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGL 612
            G   F  D V+ TVP+GVLK+  I+F PELPQ K  AI  LG G  NK+A+ F   FW  +++  G +   S + G +FL    AT  G P+L+ + AG  A   E +        V+  LK ++     + P+P Q + TRWG DP +LG Y+   VG   D Y  + E V +  +FF GEA    +  + HGAFL+G+
Sbjct:  264 GGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFW-PNVEFLGMVAPTSYACG-YFLNLHKAT--GHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFP----DAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDN--IFFGGEAVNVEHQGSAHGAFLAGV 453          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.874e-25
Identity = 77/198 (38.89%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   19 QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGL 612
            Q F  D  +  VPLGVLKSG+IKF P+LP+ K +AI  LG G+ NK+ + F  VFW      F  +  ++S    +FL    AT  G P+L+ + AG+ A   E M    A    +  L+ I      +   P+Q + +RWG D  S+GSYS   VG   D Y+ +   V +  LFFAGEAT   +P ++HGA+ +GL
Sbjct:  264 QTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPK--VEFLGVVAETSYGCSYFLNLHKAT--GHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILP----DALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDN--LFFAGEATSSSFPGSVHGAYSTGL 451          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAOX_MOUSE (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.485e-22
Identity = 70/216 (32.41%), Postives = 112/216 (51.85%), Query Frame = 1
Query:   40 VLCTVPLGVLKSGSIKFI-PELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFL------------FYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV---GDG---RLFFAGEATIRRYPATMHGAFLSGLRETAKM 630
            V+ TVPLG LK     F  P LP +K +AIK+LG+G  NK+ + F   FWE D      + +D+S   +  L            F    +     +L   +AG  +   E++   + +  + Q+L+ +     +   + ++   ++W   P++ GSYS VAVG++GDD D+MA+ +   G G   ++ FAGEAT R + +T HGA LSG RE  ++
Sbjct:  276 VIVTVPLGFLKEHQDTFFEPPLPAKKAEAIKKLGFGTNNKIFLEFEEPFWEPDCQFIQVVWEDTSPLQDTALSLQDTWFKKLIGFLVQPSFESSHVLCGFIAGLESEFMETLSDEEVLLSLTQVLRRVTGNPQLPAAKSVRR--SQWHSAPYTRGSYSYVAVGSTGDDLDLMAQPLPEDGTGTQLQVLFAGEATHRTFYSTTHGALLSGWREADRL 489          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.319e-22
Identity = 72/196 (36.73%), Postives = 103/196 (52.55%), Query Frame = 1
Query:   25 FEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGL 612
            F  D  +  +PLGVLKSG I F P+LPQ K +AI  LG G+ NK+ + F  VFW  +++  G +  ++S    +FL    AT    P+L+ + AG+ A   E      A       L+ I      +   PI  + +RWG D  SLGSYS   V    D Y+ +   + +  LFFAGEAT   YP ++HGA+ +G+
Sbjct:  267 FVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFW-PNVEFLG-VVAETSYGCSYFLNLHKAT--SHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILP----DASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDN--LFFAGEATSSSYPGSVHGAYSTGV 452          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAOX_HUMAN (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 71/225 (31.56%), Postives = 117/225 (52.00%), Query Frame = 1
Query:   25 FEGDMVLCTVPLGVLKSGSIKFI-PELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGE---------------FFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIY-EPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV-GDG-----RLFFAGEATIRRYPATMHGAFLSGLRETAKM 630
            F    V+ TVPLG L+     F  P LP  K +AI+++G+G  NK+ + F   FWE D      + +D+S   +               F +  ++A+V    +L   +AG  +   E++   + +  + Q+L+ +   P+   +P P   + +RW   P++ GSYS VAVG++G D D++A+ +  DG     ++ FAGEAT R + +T HGA LSG RE  ++
Sbjct:  416 FPAHHVIVTVPLGFLREHLDTFFDPPLPAEKAEAIRKIGFGTNNKIFLEFEEPFWEPDCQLIQLVWEDTSPLEDAAPELQDAWFRKLIGFVVLPAFASVH---VLCGFIAGLESEFMETLSDEEVLLCLTQVLRRVTGNPR---LPAPKSVLRSRWHSAPYTRGSYSYVAVGSTGGDLDLLAQPLPADGAGAQLQILFAGEATHRTFYSTTHGALLSGWREADRL 634          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAOX_BOVIN (Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 70/221 (31.67%), Postives = 107/221 (48.42%), Query Frame = 1
Query:   25 FEGDMVLCTVPLGVLKSGSIKFI-PELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGE------------FFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV-GDGR-----LFFAGEATIRRYPATMHGAFLSGLRETAKM 630
            F    V+ TVPLG  K     F  P LP  K++AI+++G+G  NK+ + F   FWE D      + +D S   +               F+         +L   +AG  +   E++   D +  + Q+L+ +     +  P  +   C  W   P++ GSYS VAVG+SGDD D +A+ +  DG+     + FAGEAT R + +T HGA LSG RE  ++
Sbjct:  279 FPAHHVVVTVPLGFFKKHLDTFFEPPLPTEKVEAIRKIGFGTNNKIFLEFEEPFWEPDCQHIQVVWEDMSPLEDTAPELQDAWFKKLIGFWVLPPFQASHVLCGFIAGLESEFMETLSDEDVLRSLTQVLRRVTGNPQLPAPRSMLRSC--WHSAPYTRGSYSYVAVGSSGDDMDRLAQPLPSDGKGAQLQVLFAGEATHRTFYSTTHGALLSGWREADRL 497          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: AMX1_CAEEL (Amine oxidase family member 1 OS=Caenorhabditis elegans GN=amx-1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.657e-21
Identity = 74/213 (34.74%), Postives = 111/213 (52.11%), Query Frame = 1
Query:   28 EGDMVLCTVPLGVLKSGSIK-FIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWET-DLDT-----FGHLTDDSSSRGEFFLFYSYATVAGGP----LLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD-DYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKM 630
            E D V+ T  L VLKS   K F+P LP  K  AI  LG GL+ K+A+ F   FW+T D D      FG ++D  + R  F +FY ++          +L++ V  E  +    +  ++   K    L+ ++    IN   P+  + + WG D F   SY+ V  G+ GD  Y+ + +S+ D +L+FAGE TI   P TM GA++SGLRE  ++
Sbjct:  604 EFDKVVITTSLSVLKSNHSKMFVPPLPIEKQKAIDDLGAGLIEKIAVKFDRRFWDTVDADGLRTEYFGKVSDCKTDRSLFNIFYDFSGKDPNGEDTFVLMSYVTAEHVNLVNVLTESEVADKFCATLRKMFPSAVIN---PLGHMMSHWGADRFVGMSYTFVPFGSDGDATYNQLKKSI-DEKLYFAGEHTIAAEPQTMAGAYISGLREAGQI 812          
BLAST of CV884748 vs. ExPASy Swiss-Prot
Match: PAO_MAIZE (Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.096e-20
Identity = 63/220 (28.64%), Postives = 108/220 (49.09%), Query Frame = 1
Query:   16 SQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY-ATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVK 672
            + V+  D V+ +  LGVL+S  I+F P+LP  K+ AI +    +  K+ + FP  FW         L   SS RG + ++  +        +L+  V  E + + E         +++Q+L+ ++   G +VP+    +  RW  D F  G++SN  VG +  +YD +   V  GR++F GE T   Y   +HGA+LSG+     + +CA  +  +  V+
Sbjct:  282 NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLY-ASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMF--PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPV--GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYHVQ 496          
The following BLAST results are available for this feature:
BLAST of CV884748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
KDM1B_HUMAN6.208e-3738.83Lysine-specific histone demethylase 1B OS=Homo sap... [more]
KDM1B_MOUSE2.608e-3539.30Lysine-specific histone demethylase 1B OS=Mus musc... [more]
PAO4_ARATH1.435e-2538.00Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO2_ARATH1.874e-2538.89Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAOX_MOUSE1.485e-2232.41Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
PAO3_ARATH4.319e-2236.73Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAOX_HUMAN9.623e-2231.56Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
PAOX_BOVIN9.623e-2231.67Peroxisomal N(1)-acetyl-spermine/spermidine oxidas... [more]
AMX1_CAEEL3.657e-2134.74Amine oxidase family member 1 OS=Caenorhabditis el... [more]
PAO_MAIZE3.096e-2028.64Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884748 ID=CV884748; Name=CV884748; organism=Citrus sinensis; type=EST; length=775bp
CAGGTACTTGCTGGGAGTCAGGTATTTGAGGGTGATATGGTACTGTGTAC
AGTTCCACTTGGGGTTTTGAAAAGCGGTTCAATTAAATTTATTCCAGAGT
TGCCTCAGAGGAAGCTTGATGCAATTAAGAGGTTGGGATATGGGTTGTTG
AATAAAGTTGCGATGCTTTTTCCTTATGTTTTTTGGGAAACAGATCTTGA
TACATTTGGGCATCTGACTGATGATTCGAGCAGTAGAGGGGAGTTCTTTC
TATTTTACAGCTATGCAACAGTTGCTGGTGGTCCTCTCTTGATTGCTTTA
GTTGCAGGAGAGGCTGCACATAAGTTTGAGAGCATGCCTCCGACAGATGC
AGTTACTAAAGTTCTTCAAATTCTTAAAGGCATATATGAACCAAAAGGAA
TCAACGTCCCAGAGCCAATCCAAACTGTTTGTACCAGATGGGGTGGTGAT
CCTTTTAGCCTGGGTTCTTACTCTAATGTTGCAGTGGGAGCGTCTGGAGA
TGATTATGATATAATGGCAGAGAGTGTGGGGGATGGAAGACTTTTCTTTG
CAGGAGAGGCCACTATTAGGCGATACCCTGCAACTATGCATGGTGCTTTT
CTTAGTGGGCTGAGGGAAACTGCAAAGATGGCTCACTGTGCTAATGCACG
AGCCTTGAGGATGAAGGTGAAGGTAGGCAAAATTCCATCAAAGAATGCCT
ATTCTTGTGCTTCTGCTCTCACTGATCTGTTCAGAGAACCTGATTTAGAA
TTTGGGAGCTTTTCTGTTATTTTTA
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