CV884745

Overview
NameCV884745
Unique NameCV884745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.119e-59
Identity = 110/148 (74.32%), Postives = 127/148 (85.81%), Query Frame = -3
Query:  223 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 663
            + LP RIIKETQRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+APNPDDPL+ ++ + WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.367e-57
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = -3
Query:  223 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 663
            ++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYHPNID+LGRICLD+LK  WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W  NE  A   A+EWT+LYA
Sbjct:    2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.352e-55
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = -3
Query:  223 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 657
            LP+RIIKE + L  +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EYPM  P VRFLTKIYHPN+DKLGRICL  LK  WSPALQIRTVLLSIQAL+ APNPDDPL  ++AK WK NE +A+  A+EWT+ YA
Sbjct:    3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.573e-37
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = -3
Query:  223 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 651
            +RI KE   L  +P    SA P  D++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NPDDPL   IA+ +KT++A+   TAKEWT+ YA
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYA 147          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.973e-37
Identity = 74/145 (51.03%), Postives = 98/145 (67.59%), Query Frame = -3
Query:  217 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 651
            +RI+KE + L  +P    SA P  ++M ++   I+GPT SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.801e-37
Identity = 77/146 (52.74%), Postives = 93/146 (63.70%), Query Frame = -3
Query:  223 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 648
            R+ +E Q L  EP PG+    +E NM      I+G + SPYEGG+F LE+ +PE YP   PK+RFLT IYHPNID  GRICLDIL    K  W PAL I TVL SIQ L+S PNPDDPL  +I+  +K N A     AK+WT  +A
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.019e-36
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = -3
Query:  217 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 651
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ ++   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.331e-36
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = -3
Query:  217 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 651
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.738e-36
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = -3
Query:  217 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 651
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.872e-36
Identity = 72/145 (49.66%), Postives = 99/145 (68.28%), Query Frame = -3
Query:  217 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 651
            +RI+KE + L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
The following BLAST results are available for this feature:
BLAST of CV884745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UE2NL_HUMAN1.119e-5974.32Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC13_YEAST1.367e-5768.71Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO6.352e-5568.28Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC5_YEAST4.573e-3753.15Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_SOLLC5.973e-3751.03Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBE2T_XENLA7.801e-3752.74Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC11_ARATH1.019e-3650.34Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH1.331e-3650.34Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH1.738e-3649.66Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.872e-3649.66Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884745 ID=CV884745; Name=CV884745; organism=Citrus sinensis; type=EST; length=755bp
TGTATATCATCTAATCATACAGTTCAAAGACATGGCTTCCACAAGAAGAA
AATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCCG
AATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACAGAC
AGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTC
CACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCT
GTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTC
GGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCA
ACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCAGAATA
TCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGT
AAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGTCGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTGATGATACGTC
GAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTTTTGTTTTTTA
ACCTTCTTGTTGTTGCAGAGAAAGAACGCTGATAGGGTTTTCTAAGTCTA
ACCCT
back to top