CV884745

Overview
NameCV884745
Unique NameCV884745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  223 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 672
            MAN  + R  R  KE  +        I     ++N       I GP  +PYEGG ++LE+ +PE YP   PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K N     +TA+ W  +YA
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  223 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 672
            MAN  + R  R  KE  +        I     ++N       I GP  +PYEGG ++LE+ +PE YP   PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K N     +TA+ W  +YA
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = -3
Query:  223 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 672
            MAN  + R  R  KE  +        I     ++N       I GP  +PYEGG ++LE+ +PE YP   PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K N     +TA+ W  +YA
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 56/130 (43.08%), Postives = 89/130 (68.46%), Query Frame = -3
Query:  262 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 651
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRF++K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 56/130 (43.08%), Postives = 89/130 (68.46%), Query Frame = -3
Query:  262 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 651
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRF++K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 56/137 (40.88%), Postives = 92/137 (67.15%), Query Frame = -3
Query:  241 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 651
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  ++ ++++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 55/137 (40.15%), Postives = 92/137 (67.15%), Query Frame = -3
Query:  241 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 651
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   E+YP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K ++++ ++  KE
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.021e-28
Identity = 72/155 (46.45%), Postives = 89/155 (57.42%), Query Frame = -3
Query:  217 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 672
            MAN  + R  R  KE  R        I      D+       I GP  +PYEGG F LE+ +PE YP   PKVRF+T+I+HPNI  + G ICLDILKD W+ A+ +RTVLLS+QALL+A  PDDP    +A  +K      + TAK WT  YA G
Sbjct:    1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.334e-28
Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  244 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAK 651
            +R+I++ +RL ++P  GIS +P  DN+  +N +I GP  +P+E G FKL L   E YP   P V+FL+K++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A  ++ N  E V   K
Sbjct:    7 KRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
BLAST of CV884745 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.334e-28
Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = -3
Query:  220 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 666
            + N  RRI KE   +  +   GI      D++ +   M  GP  +PYEGG F +++ +P +YP   PK+ F TKIYHPN+  + G ICLDILKD+WSP   +++ L+S+Q+LL  P P +P    +A+ +  N  + V TA+EWT  YA+
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAA 151          
The following BLAST results are available for this feature:
BLAST of CV884745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2K_MOUSE3.510e-2945.10Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN3.510e-2945.10Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN3.510e-2945.10Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2A_MOUSE3.510e-2943.08Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.510e-2943.08Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_KLULA7.819e-2940.88Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_CANGA7.819e-2940.15Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBCD4_DROME1.021e-2846.45Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC2_USTMA1.334e-2841.91Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC1_SCHPO1.334e-2840.67Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884745 ID=CV884745; Name=CV884745; organism=Citrus sinensis; type=EST; length=755bp
TGTATATCATCTAATCATACAGTTCAAAGACATGGCTTCCACAAGAAGAA
AATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCCG
AATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACAGAC
AGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTC
CACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCT
GTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTC
GGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCA
ACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCAGAATA
TCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGT
AAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGTCGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTGATGATACGTC
GAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTTTTGTTTTTTA
ACCTTCTTGTTGTTGCAGAGAAAGAACGCTGATAGGGTTTTCTAAGTCTA
ACCCT
back to top