CV884744

Overview
NameCV884744
Unique NameCV884744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 539
            R+++KE Q + + P  GI    +E ++      I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 52/133 (39.10%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 476
            R +I E + L+  P+     S +E+N+  ++V++ GP  + YEGG+FK ++  P EYP A PK+ F ++++HPNI   GR+C+ IL           WSPA +I T+LLS+ +LL+ PNPD P + + AK ++
Sbjct:    4 RFLIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.275e-22
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 539
            R++++E Q + + P  GI    +E ++     +I GP  +PY  GVF+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   17 RQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.277e-22
Identity = 51/146 (34.93%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 539
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.277e-22
Identity = 51/146 (34.93%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 539
            R++++E Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   17 RQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.277e-22
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            R+++KE Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 49/133 (36.84%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 476
            R ++ E + L+  P+     S +E++M  ++V++ GP  + YEGG+FK ++  P EYP A P++ F ++++HPNI   G++C+ IL           WSPA +I T+LLS+ +LL+ PNPD P + + AK ++
Sbjct:    4 RFLMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = 3
Query:   84 ANSNLPRRIIK----ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +N NLP  +IK    E + L   P  GI    ++++       I GP  +PYE G+F+++L L  ++P + PK  F+TKI+HPN+   G IC++ LK  W+P+L +R VL  ++ LL  P P+  L+E   K    N  E    A+ +T ++A
Sbjct:    3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHA 155          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.176e-21
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            +R++KE Q+L+ +  PGI A P SE+N+  ++ +I GP  +PY  GVF  +L  P++YP++ PK+ F   I HPNI   G +C+ IL             +++WSP   +  +LLS+ ++LS PN +   + +    W+ N  E
Sbjct:    7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPE 150          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  108 IIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 476
            ++ E + L+  P+     S +EDN+  ++V++ GP  + YEGG+FK ++  P +YP   P++ F ++++HPNI   G++C+ IL           WSPA +I TVLLS+ +LL+ PNPD P + + AK ++
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYR 136          
The following BLAST results are available for this feature:
BLAST of CV884744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2S_DROVI2.507e-2236.30Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC_ASFB72.507e-2239.10Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_DROWI3.275e-2235.62Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROPS4.277e-2234.93Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE4.277e-2234.93Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROMO4.277e-2235.66Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBC_ASFWA3.621e-2136.84Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC22_ARATH3.621e-2135.29Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBC7_YEAST6.176e-2134.72Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC_ASFM28.066e-2136.64Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884744 ID=CV884744; Name=CV884744; organism=Citrus sinensis; type=EST; length=769bp
GTTAGACTTAGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAG
GTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCC
TCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAG
GAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATG
ATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGGTGTTCAAATTGGA
ATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTC
TTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTT
GATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACT
GTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCT
CCGAGAACATTGCCAAACACTGGAAAACAAATGAGGCCGAAGCAGTTGAA
ACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACATGG
TGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATTCA
CTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTGAACA
TTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCGCACATGTCAATTA
TTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTATGATTAGATGATAT
ACATTGTTTCTCAAAAAAA
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