CV884744

Overview
NameCV884744
Unique NameCV884744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.053e-20
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMIL-GPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVET-AKEWTRLY 527
            R++KE + L +E    I   P +++  Y  V I+ GP  +PYE G F+L++ +P  YP+  P ++F+TKI+HPNI  K G ICLD+LK  WS    +++V  SI ALLS P  D PL+ +     +  + +  ++ A+ +TRLY
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   81 MANSNLPRRIIKETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            MAN+     + K+ + L  +P  G SA    E N+  ++V I+GP  + YEGG F   +  PE YP++ P V F ++++HPN+   G++C+ IL              ++W+P   + +++LSI ++LS PN + P +   AK W+ N AE
Sbjct:    1 MANNQASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAE 151          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.228e-20
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  141 PAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            P  G SA   +DN  Y + V+++GP  + YEGG FK  L  P +YP   PK++F+++I+HPNIDK G +C+ IL D             +W P   + T+LLS+ ++L+ PN + P + + AK  + N AE
Sbjct:   19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAE 149          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 476
            R ++ E + L   P+     S +E+N+  ++V++ GP+ + YEGG+FK ++  P  YP   PK+ F ++++HPNI   GR+C+ IL           WSPA +I TVLLS+ +L + PN D P + + AK ++
Sbjct:    4 RFLLTEYRNLTENPSEHFKVSVNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYR 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 521
            RR+ +E   L+      +    S D        +L P ++PY  G F++E+  P +YP   PK+ F TKIYHPN+D+ G +CL I+  D W P  +   VL ++ A++  P P+ PL  ++A+ +     + ++TA+E+T+
Sbjct:    5 RRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLVPEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTK 145          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.165e-19
Identity = 47/133 (35.34%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 476
            R ++ E + L   P+     S +E+NM  ++V++ GP  + YEGG+FK ++  P  YP   P++ F ++++HPNI   GR+C+ IL           WSP  +I T+LLS+ +LL+ PN D P + + AK ++
Sbjct:    4 RFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGI-SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 527
            RR++KE + +         +    E N+  +  +I+ P   PY+ G F++E+  P EYP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  +  +  + A+E+T+ Y
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGI-SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 527
            RR++KE + +         +    E N+  +  +I+ P   PY+ G F++E+  P EYP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  +  +  + A+E+T+ Y
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGI-SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 527
            RR++KE + +         +    E N+  +  +I+ P   PY+ G F++E+  P EYP   PK+ F TKIYHPNID+ G++CL ++  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  +  +  + A+E+T+ Y
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  174 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            D M+ F V   GP  S YEGGV+K+ + LP+ YP  +P V F+TKIYHPN+D++ G +CLD++   WSP   +  V  + +  LL  PNP DPL+   A     +     +  KE+   YA
Sbjct:   27 DGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYA 147          
The following BLAST results are available for this feature:
BLAST of CV884744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBCX_DICDI1.053e-2038.89Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC14_ARATH1.797e-2033.11Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_CAEEL5.228e-2038.17Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC_ASFK58.918e-2036.09Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC84_DROME8.918e-2032.62Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC_ASFP41.165e-1935.34Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2L3_MOUSE1.987e-1933.33Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.987e-1933.33Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN1.987e-1933.33Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC5_ARATH2.595e-1940.50Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884744 ID=CV884744; Name=CV884744; organism=Citrus sinensis; type=EST; length=769bp
GTTAGACTTAGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAG
GTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCC
TCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAG
GAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATG
ATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGGTGTTCAAATTGGA
ATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTC
TTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTT
GATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACT
GTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCT
CCGAGAACATTGCCAAACACTGGAAAACAAATGAGGCCGAAGCAGTTGAA
ACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACATGG
TGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATTCA
CTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTGAACA
TTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCGCACATGTCAATTA
TTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTATGATTAGATGATAT
ACATTGTTTCTCAAAAAAA
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