CV884744

Overview
NameCV884744
Unique NameCV884744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 536
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            RRI+KE + L  +P    SA P+ ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +    A+ WT+ YA
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35
Identity = 75/143 (52.45%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE Q L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +  E A+EWTR YA
Sbjct:    4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35
Identity = 74/143 (51.75%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  +++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNPDDPL   IA  +KT  A+   TA+EWTR YA
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PK+ F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NPDDPL   IA  +KT+  +   TA+EWT+ YA
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 72/146 (49.32%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            R+ +E   L +EP PGI+    +D M      ILG   +PYE GVFKLE+ +PE YP   P++RFLT IYHPNID  GRICLD+L    K  W P+L I TVL SIQ L+S PNPDDPL  +I+  +K N+   ++ A++WT  +A
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 536
            +RI KE + L  +P    SA P+ D+M  +   I+GP  SP+ GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL +  VLLSI +LL+ PNPDDPL   IA  +KT+  +   TA+ WT+ YA G
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI +E   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ +    +A+EWTR YA
Sbjct:    4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+     + A+EWT+ YA
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  +++ ++   I+GP  SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNPD+PL   IA  +KT+ A    TA+EWTR YA
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146          
The following BLAST results are available for this feature:
BLAST of CV884744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9_ARATH6.797e-3649.66SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC29_ARATH6.797e-3650.35Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBCD1_DROME1.514e-3552.45Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC1_MAGGR1.514e-3551.75Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_YEAST2.583e-3551.05Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBE2T_HUMAN3.373e-3549.32Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC30_ARATH4.406e-3549.66Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC4_SCHPO5.754e-3551.05Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC2_CAEEL7.515e-3551.05Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_COLGL7.515e-3551.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884744 ID=CV884744; Name=CV884744; organism=Citrus sinensis; type=EST; length=769bp
GTTAGACTTAGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAG
GTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCC
TCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAG
GAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATG
ATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGGTGTTCAAATTGGA
ATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTC
TTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTT
GATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACT
GTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCT
CCGAGAACATTGCCAAACACTGGAAAACAAATGAGGCCGAAGCAGTTGAA
ACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACATGG
TGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATTCA
CTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTGAACA
TTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCGCACATGTCAATTA
TTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTATGATTAGATGATAT
ACATTGTTTCTCAAAAAAA
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