CV884744

Overview
NameCV884744
Unique NameCV884744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.515e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.814e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.186e-34
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP+  PK+   TKIYHPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+  NPDDPL   IA  +K +  +   TAKEWT+ YA
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 73/146 (50.00%), Postives = 92/146 (63.01%), Query Frame = 3
Query:  105 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            R+ KE   L  EP PGI+    +D +      ILG   +PYE GVF LE+ +PE YP   P+VRFLT IYHPNID  GRICLDIL    K  W P+L I TVL SIQ L++ PNPDDPL  +I+  +K N+   ++ AK+WT  +A
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.856e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of CV884744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
U2D2B_RAT7.515e-3550.35Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE7.515e-3550.35Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D2_XENLA9.814e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT9.814e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE9.814e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN9.814e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN9.814e-3551.05Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_CANAL2.186e-3451.05Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBE2T_MOUSE2.856e-3450.00Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UB2D3_RAT2.856e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884744 ID=CV884744; Name=CV884744; organism=Citrus sinensis; type=EST; length=769bp
GTTAGACTTAGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAG
GTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCC
TCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAG
GAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATG
ATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGGTGTTCAAATTGGA
ATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTC
TTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTT
GATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACT
GTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCT
CCGAGAACATTGCCAAACACTGGAAAACAAATGAGGCCGAAGCAGTTGAA
ACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACATGG
TGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATTCA
CTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTGAACA
TTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCGCACATGTCAATTA
TTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTATGATTAGATGATAT
ACATTGTTTCTCAAAAAAA
back to top