CV884744

Overview
NameCV884744
Unique NameCV884744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:56..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.123e-30
Identity = 72/144 (50.00%), Postives = 88/144 (61.11%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 533
            +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EYP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+  NP DPL  +IA  +  N  E    A+ WT+ YA+
Sbjct:   89 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYAT 232          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.915e-30
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 3
Query:  105 RIIKETQRL-LSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 530
            RI KE Q    ++ + GI   P  DN+      I GP  +PYEGG F++++ +P+ YP   PK++F TK++HPNI  + G ICLDILKD+WSPAL ++T L+SIQALLSAP P DP    +A+ +  N    V TA+ WT  +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.118e-29
Identity = 57/136 (41.91%), Postives = 90/136 (66.18%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAK 509
            RR++++ +RL  +P  G+S +P+++N+  +N +I GP  +P+E G FKL +   EEYP   P VRF++K++HPN+   G ICLDIL+++WSP   +  +L SIQ+LLS PNP+ P +   A+ +K N  E  +  K
Sbjct:    7 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 491
            RR++++ +RL  +P  G+S +PSE+N+  +N +I GP  +P+E G FKL +   EEYP   P VRFL+K++HPN+   G ICLDIL+++WSP   + ++L SIQ+LL  PNP+ P +   A+ ++ N+ E
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKRE 136          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/137 (41.61%), Postives = 92/137 (67.15%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 512
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K ++++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of CV884744 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 57/137 (41.61%), Postives = 92/137 (67.15%), Query Frame = 3
Query:  102 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 512
            RR++++ +R+  +  PG+SASP  DN+  +N MI+GP  +PYE G F+L L   EEYP   P V+FL++++HPN+   G ICLDIL+++W+P   + ++L SIQ+L + PNP  P +   A  +K ++++ V+  KE
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
The following BLAST results are available for this feature:
BLAST of CV884744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBCD2_DROME1.123e-3050.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC27_ARATH1.915e-3046.53Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBCD6_DROME2.118e-2941.91Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT2.766e-2943.85Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.766e-2943.85Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.766e-2943.85Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.766e-2943.85Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.766e-2943.85Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_YEAST2.766e-2941.61Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO2.766e-2941.61Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884744 ID=CV884744; Name=CV884744; organism=Citrus sinensis; type=EST; length=769bp
GTTAGACTTAGAAAACCCTATCAGCGTTCTTTCTCTGCAACAACAAGAAG
GTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGAACAGTAATCTCCC
TCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGTGAACCAGCACCAG
GAATAAGTGCATCTCCCTCGGAAGATAATATGCGATACTTTAATGTGATG
ATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGGTGTTCAAATTGGA
ATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTCCGATTTC
TTACCAAGATATATCATCCTAACATTGATAAGCTTGGAAGGATTTGTCTT
GATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACT
GTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCT
CCGAGAACATTGCCAAACACTGGAAAACAAATGAGGCCGAAGCAGTTGAA
ACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTGCTTGATGACATGG
TGGAAAATATCACTTCATTCAAATAACAATTGTGCAATGTATGCTATTCA
CTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAATTGATGTTTGAACA
TTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCGCACATGTCAATTA
TTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTATGATTAGATGATAT
ACATTGTTTCTCAAAAAAA
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