CV884740

Overview
NameCV884740
Unique NameCV884740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8853 contig Csv1_Contig8853:2..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = -1 
Query:  313 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 492
            +AFGG K RS++  L+  Y K  +KV+E++TH     EIN+AF  +H GDCLR VLK  +
Sbjct:  325 SAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSDE 384
[Close]
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 27/60 (45.00%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:  313 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 492
            T FG +K RS +P +V+KYM KE+++++++TH +   EIN+AF  M  G+ LRC++ M D
Sbjct:  321 TFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITMAD 380
[Close]
BLAST of CV884740 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 25/60 (41.67%), Postives = 46/60 (76.67%), Query Frame = -1 
Query:  313 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 492
            T +G +K R+ +P +V+KYMK E+++++++TH +   EIN+AF YM  G+ +RC++KM++
Sbjct:  321 TFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIKMEE 380
The following BLAST results are available for this feature:
BLAST of CV884740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
FADH_YEAST8.965e-1148.33S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH2_SOLLC8.965e-1145.00Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_PEA8.965e-1141.67Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884740 ID=CV884740; Name=CV884740; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTGGTAAACAAACCCCAGACAACCTTCAGGGATCCATAAAT
GTTATTCTGAAAGCTACTGCAGCAGCAGATAGTTCATACTTCATAGACAA
CACATTTATTATTGTGATGCAAGTCCTTAGCAATATGCTGCTTAATAAAG
TTGAATAGAAACATTTTTGCTGCAACACATGCCAAACTATCTCACATTAG
AGTAGTTTTCTTCACACACTCACAGTTTGCACATAAAAGGATGCAATTAC
CATGTAAACACCAAAATATACCATTTCATAAGAACTAATGCAGGGCTCAA
TAGATCCTCTCAATCCTGCATTTTAAGCACACAGCGTAGGCAGTCCCCTC
CATGCATATAACGGAATGCCTCGTTGATCTCCCCAAGAGTCATATTGTGA
GTTACGTACTCATCAACCTTAATTTCCTTCTTCATGTACTTGTCTACAAG
CCAAGGCACTTGTGAACGGCTCTTGAAACCACCAAAAGCTGT
back to top