CV884728

Overview
NameCV884728
Unique NameCV884728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9906 contig Csv1_Contig9906:557..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884728 vs. ExPASy Swiss-Prot
Match: DMPM_STRAD (O-demethylpuromycin-O-methyltransferase OS=Streptomyces alboniger GN=dmpM PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 57/220 (25.91%), Postives = 100/220 (45.45%), Query Frame = 3
Query:   48 VMMPGWFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSFVINKIV-ESYKGFQNITRLVDVXXXXXXXXXXXXSKYPHIKGINFDVPHVIKDASSYPGMEHVG-------GDMYQKIPEG-DAILMKWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPHGRERTXKEFTALAIEAGFK 680
            V    W      I  GE ++++  G DF+ YL      +  F + M   T  +   +  E    F +   +VD+            S +P ++G+ FD P   +DA++      VG       GD + ++P G D  ++K +LH++ D     ILR    A+P   ++LV+   LP+  DS+ A    ++ D   L+ +  GRER+ ++  +L  + GF+
Sbjct:  138 VFRQAWSHFDHSIRTGEPAFDQVFGTDFFSYLSERPELSGTFTSSMREATRTMSTALAKEEEYDFSSYGTVVDIGGADGSLLAAVLSAHPGVEGVVFDSPEGARDAAATLDAAGVGERGRVETGDFFTRVPGGGDLYVLKSILHDWSDARSADILRTVRAAMPAHARLLVVEVLLPDTVDSS-AHPLGYLSDLYMLVNM-GGRERSERDLRSLLSDTGFR 355          
BLAST of CV884728 vs. ExPASy Swiss-Prot
Match: OMT9_DICDI (O-methyltransferase 9 OS=Dictyostelium discoideum GN=omt9 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 57/212 (26.89%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   72 LKDQILEGELSYNKALGMD-FYDYLGTDSRFNEVFNNGMIGQTSFVINKIVESYKG--FQNITRLVDVXXXXXXXXXXXXSKYPHIK-GINFDVPHVIKDAS-----SYPGMEHVGGDMYQKIPEGDAILMKWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPHGRERTXKEFTALAIEAGFK 680
            L +    G  +  K++G++ F++      ++ ++FN  M   T   I+ I +S KG  F     +VD+              YP IK GINFD+  VI  +      S+P + H+ G+ ++ +PE D  +MK++LH++  ++C+KIL+   K++  + K+ +    +   P    +  +++I   I + Q+ + +ERT  E+  L   A FK
Sbjct:  133 LPETFANGHSNATKSVGVNHFWELFDLHPQYKDLFNQTMKVYTEAAISNITQS-KGIDFSQYDTVVDIGGNHGLLIGNLLEIYPTIKHGINFDLDVVINSSDQTLRYSHPRLTHIPGNFFESVPESDCYIMKFILHDWPTQDCVKILKTISKSMKPNAKIHLFEIIID--PRKGYSKYETYI--DILMFQMVNAKERTLDEWKELFELADFK 339          
BLAST of CV884728 vs. ExPASy Swiss-Prot
Match: HIOM_CHICK (Hydroxyindole O-methyltransferase OS=Gallus gallus GN=ASMT PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.591e-12
Identity = 57/217 (26.27%), Postives = 93/217 (42.86%), Query Frame = 3
Query:   63 WFQLKDQILEGELSYNKALGMDFYDYLGTDSRFNEVFNNGMIGQTSF--VINKIVESYKGFQNITRLVDVXXXXXXXXXXXXSKYPHIKGINFDVPHVIKDASS--YPGME-----HVGGDMYQKIPEGDAILMKWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPHGRERTXKEFTALAIEAGFKGI 686
            W  L D + EG   Y +A G+   D  G   R  E     + GQ S   +  + V +       T++ D+              YP+     +D+P V++ A     P  E     H G      IPE D  ++  +LH++DD+ C ++L   YKA    G VL++ S L E       ++    L ++ ++    G+ERT  E++ L   AGF+ +
Sbjct:  118 WHYLTDAVREGRNQYERAFGISSKDLFGARYRSEEEMLKFLAGQNSIWSICGRDVLTAFDLSPFTQIYDLGGGGGALAQECVFLYPNCTVTIYDLPKVVQVAKERLVPPEERRIAFHEGDFFKDSIPEADLYILSKILHDWDDKKCRQLLAEVYKACRPGGGVLLVESLLSEDRSGPVETQ----LYSLNMLVQTEGKERTAVEYSELLGAAGFREV 330          
The following BLAST results are available for this feature:
BLAST of CV884728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DMPM_STRAD2.007e-1525.91O-demethylpuromycin-O-methyltransferase OS=Strepto... [more]
OMT9_DICDI5.841e-1526.89O-methyltransferase 9 OS=Dictyostelium discoideum ... [more]
HIOM_CHICK1.591e-1226.27Hydroxyindole O-methyltransferase OS=Gallus gallus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884728 ID=CV884728; Name=CV884728; organism=Citrus sinensis; type=EST; length=843bp
AAAACGGCGTCTCAATGCGTCCCTATATGAACTTGTCTCTTGACAAAGTA
ATGATGCCTGGCTGGTTCCAATTGAAAGACCAAATTCTTGAAGGAGAACT
TTCGTATAATAAAGCCCTCGGAATGGATTTCTACGATTATCTGGGCACCG
ACTCCAGGTTCAATGAAGTTTTCAACAATGGAATGATCGGCCAGACTTCT
TTTGTAATCAATAAGATTGTAGAATCCTACAAAGGCTTTCAGAATATTAC
GCGCCTTGTTGACGTTGGCGGTGGTTTAGGAATCACCCTTGCGACCATAA
TTTCCAAATACCCTCATATTAAGGGTATTAATTTTGACGTACCTCATGTT
ATAAAAGATGCCTCATCTTATCCCGGCATGGAACATGTTGGCGGAGATAT
GTACCAAAAAATTCCAGAGGGGGATGCCATTTTAATGAAGTGGATGCTTC
ATAATTTTGATGATGAGAATTGCATAAAGATACTGAGGAATTGTTACAAA
GCTCTTCCAAATGATGGAAAGGTACTTGTTATTAACTCAACGTTGCCAGA
AGTGCCTGACAGTACCGAGGCTTCAAGGGATTCCTTCATTTTAGATGCAA
TTTTTTTAATCCAAATTCCTCATGGAAGGGAGCGGACCANAAAGGAGTTC
ACTGCATTGGCAATCGAAGCTGGATTTAAGGGTATCAACTTTGAATGTAA
CGTTTGCAATTCCTATGTCATGGAATTCTACAAGTAACTTTGAAGCTAGA
TTGCTTCATTCTTTCTTTATCAGAAAGATGCATCTTCTCAATTTTAATTT
GGAGTGTCGATACTCCATTTTCTTTTCTGTAACTTTCTGTTTT
back to top