CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 47/184 (25.54%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 691
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K  +     +  +    GK +   ++  + V +     +++ N A LD
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRKGQD----SIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLD 177          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA1_ECOLI (Glucose-1-phosphate thymidylyltransferase 1 OS=Escherichia coli (strain K12) GN=rmlA1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 62/252 (24.60%), Postives = 117/252 (46.43%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   +++E        A++    V++P +YGVV   D  G      EKP     N    G+Y  +  V+   + L+P++   +E     +I LE G+L  AM+  G+ W+D G  +  I     ++ ++ ++   K++
Sbjct:    5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF-DKNGTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FIATIEERQGLKVS 252          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_PELTS (Bifunctional protein glmU OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glmU PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 57/206 (27.67%), Postives = 101/206 (49.03%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEK----PKLFVGNKINAGIYLLNPA-VLDRIE-LRPTSIEKEVF 733
            + A+IL  G GTR++     +PK L     +PM+ + + A+ A G+ ++V+   Y  E +    +E E    + +    + E LGTA  L  A   L    G+   +  ++ +I     A++  FH+  G  A+++  + D+P+ YG V+  D  G V K VE+    P   +  +IN GIY    A + D ++ +RP + + E +
Sbjct:    3 LAAVILAAGRGTRMKS---KLPKVLHRVCGRPMLSYIVNAVAAAGIKKIVVVAGYGAEQVA---REVEGLAQVAL----QAEQLGTAHALLQAGPFLSGFAGKVLVLCGDTPLIEAGTLAKLAGFHRTAGAAATLLTAEPDDPAGYGRVI-RDGRGNVIKIVEEKDASPAEKLIREINTGIYCFEAAGLFDALKGIRPANAQGEYY 197          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_STRR6 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D + +   E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G ++  D+  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDNVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFG-IMNTDANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_STRP2 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D + +   E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G ++  D+  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDNVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFG-IMNTDANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACHD (Glucose-1-phosphate adenylyltransferase OS=Bacillus halodurans GN=glgC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 63/245 (25.71%), Postives = 107/245 (43.67%), Query Frame = 2
Query:  146 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILH-QIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEPLG------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-------SIEKEVFPK-IALEGKLFAMVLPGFWMDIGQPRDY 814
            ++L GG G RL  LT  + KP V F  K  I+   +      G+  V +   Y+P  +   +      + + + G   +     E  G      TA  +   R  +     E   +L+ D I +  +  MI  HK  G +A+I V +V  +E S++G++   +    + +F EKP   + N  + GIY+ N +VL    ++            K++ PK +A + KL A    G+W D+G  + Y
Sbjct:    8 MLLAGGEGKRLGQLTRKLAKPAVYFGGKYRIIDFPLSNCTNSGIDTVGVLTQYEPLALNGHIGIGSPWDLDRRHGGVTVLPPYIEKQGGSWYKGTADAIYQNRYYIEQYDPEYVLILSGDHIYKMDYDRMISHHKKLGADATISVIEVPWEEASRFGIMNTNEEM-TITQFEEKPTTPISNLASMGIYIFNWSVLKSYLIQDAKQANSSHDFGKDIIPKMLAKDLKLVAYPFEGYWKDVGTIKSY 251          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 50/202 (24.75%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIELRPTSIEKEVFPKI 742
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K  +     +  +    GK +   ++  + V +     +++ N A LD  + ++ + ++K  +P+I
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRKGQD----SLEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQK--YPRI 193          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_STRZT (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 60/243 (24.69%), Postives = 106/243 (43.62%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G ++  D+  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFG-IMNTDANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_STRZP (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain P1031) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 60/243 (24.69%), Postives = 106/243 (43.62%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G ++  D+  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFG-IMNTDANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_STRZJ (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain JJA) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 60/243 (24.69%), Postives = 106/243 (43.62%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-------PAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            M ALIL GG GTRL  LT S+ KP V+F  +  I+   +      G+  V +   YQP  + N +    +        G+ I+             GT+  +    D +     E   +L+ D I +  + +M++ HK +    ++ V  V   E S++G ++  D+  ++ +F EKP      K + GIY+ +           ++ ++  +   K V P     G+ ++A    G+W D+G
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASEGNRWFEGTSHAIYQNIDYIDSVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFG-IMNTDANNRIVEFEEKPAQPKSTKASMGIYIFDWQRLRNMLVAAEKSKVGMSDFGKNVIPNYLESGESVYAYEFSGYWKDVG 246          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
EI2BG_HUMAN2.018e-1125.54Translation initiation factor eIF-2B subunit gamma... [more]
RMLA1_ECOLI2.636e-1124.60Glucose-1-phosphate thymidylyltransferase 1 OS=Esc... [more]
GLMU_PELTS3.442e-1127.67Bifunctional protein glmU OS=Pelotomaculum thermop... [more]
GLGC_STRR63.442e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP23.442e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_BACHD3.442e-1125.71Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
EI2BG_MACFA3.442e-1124.75Translation initiation factor eIF-2B subunit gamma... [more]
GLGC_STRZT4.496e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZP4.496e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZJ4.496e-1124.69Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
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