CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_GEOLS (Bifunctional protein glmU OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glmU PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 51/182 (28.02%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEK----PKLFVGNKINAGIYLL 673
            ALIL  G GTR++    ++ K L E A +PM+   + A +  G  ++V+   +Q +      K F A  GI+I  + + E LGT   ++ + D+L   +G    +  ++ +++      +   H A G   +++  K+D P  YG +V  DS G+V + VE+    P+    +++N+GIY +
Sbjct:    6 ALILAAGKGTRMKS---ALVKVLHELAGRPMLGWPLAAAREAGAGQIVIVAGHQAD---QVQKRFGADAGIRI--ALQEEQLGTGHAVSCSLDQLDGLSGAVLILCGDTPLLTAATLQRLAAEHAASGAAVTVLTAKLDRPFGYGRIV-RDSEGRVRRIVEQKDASPEEQAIDEVNSGIYCM 178          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_CLOB8 (Glucose-1-phosphate adenylyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 66/242 (27.27%), Postives = 108/242 (44.63%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------AKLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEK--------EVFPKIALEG-KLFAMVLPGFWMDIG 799
            A+IL GG G+RL  LT  + KP V F  K  I+   +      G+  V +   Y+P  +   +   E      A  G+ ++   + E       GTA  +    + +     E   +L+ D I +  + +M++FHK    EA+I V +V  DE S++G++   +    + +F EKPK    N  + GIY+ N   L +  LR    +K         + P +   G K+ A    G+W D+G
Sbjct:    8 AMILAGGQGSRLGVLTKKLAKPAVPFGGKYRIIDFPLSNCSNSGIYTVGVLTQYKPLELNAHIGIGEAWDLDRAHGGVHVLPPYQEEKGGEWYKGTANAIYQNIEFVDRYDPEYILILSGDHIYKMDYTKMLDFHKEKQAEATIAVIEVPMDEASRFGIMNTREDL-SIYEFEEKPKNPKNNLASMGIYIFNWKTLKKY-LREDESDKTSKNDFGMNIIPSMLGNGNKMVAYPFKGYWKDVG 247          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
GLMU_GEOLS7.668e-1128.02Bifunctional protein glmU OS=Geobacter lovleyi (st... [more]
GLGC_CLOB87.668e-1127.27Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
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