CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_META3 (Bifunctional protein glmU OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0642 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.334e-22
Identity = 78/267 (29.21%), Postives = 135/267 (50.56%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPM---ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPT---SIE-KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKLATGANIVGNVLVHE 913
            M A+IL  G GTRL PLT ++PKP++     P+   I+++I+ L    V  + L + Y+ E+++N  K  +     KI   ++T+  GT   + +A++ +  D    F V+N D+I +     ++        +  I + +VD PS +GV+V+++    +E   EKPK    N INAGIY     + D +E LRP+    +E  +   ++  E  +  + L G+W DIG+P D +      L +++     K+     I G V++ E
Sbjct:    1 MDAVILCAGKGTRLMPLTENIPKPMLPVGGAPILERIINKIDKL----VENIYLIVKYEKEIIINHFKNND-----KIKFIEQTDIDGTGYAVLMAKNHISGD----FLVINGDIIFDDDLTNIVN----DDVKNIITLNEVDNPSNFGVIVVDNQNNIIE-LQEKPKNPKSNLINAGIYKFENKIFDILETLRPSERGEVELTDAIKELIKENNIKGIKLNGYWNDIGKPWDLLDANTHILKNIKTDIKGKIGKNVVIEGAVIIEE 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RFBF_BACSU (Probable glucose-1-phosphate cytidylyltransferase OS=Bacillus subtilis GN=yfnH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 71/240 (29.58%), Postives = 115/240 (47.92%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ--ETEPLG-----------------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 796
            MKA+IL GG GTR+  +T  +PKPL     KP++ H ++  +  GV E +L + Y+ E +  +  ++E K     + S   E + LG                 TAG +  A+D + D+T   F +   D ++      +I +H+  G  A+  VT +D+ S++G + +ED  G  + F EK        IN G ++L+P V D + +   T  E E    +A +G+L      GFW  I
Sbjct:    1 MKAVILCGGKGTRMSEVTNDIPKPLAMIGGKPILWHIMKIYQYYGVNEFILLLGYKGEKIKEYFLDYEWKHNSLTLDSSTGEVQMLGQPETWKITFLETGVDTLTAGRILQAKDYIGDET---FLLTYGDGLANINLFHLISYHQTKGAAAT--VTGIDKVSQFGTLTVED--GMAKTFSEKTS--SDGIINGGFFVLSPKVFDYLPKDGNTMFEDEPLKNLAKDGELAVYRHYGFWTAI 231          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_CLONN (Glucose-1-phosphate adenylyltransferase OS=Clostridium novyi (strain NT) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.764e-15
Identity = 67/245 (27.35%), Postives = 117/245 (47.76%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEP------LGTAGPLALARDKLIDDTGEP--FFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--TKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIE-------KEVFPKIALEG-KLFAMVLPGFWMDIG 799
            M A+IL GG GTRL+ LT +  KP V F  K  I+   +      G+  + +   Y+P ++ + +      + + K G   I             +GTA   A+ ++ +  D  +P    VL+ D I +  +++M++FHK    +A+I V    ++E S++G++   D   K+ +F EKP+    NK + GIY+ N  +L    +  + +E       K + P +   G  L+A    G+W D+G
Sbjct:    6 MLAMILAGGQGTRLKILTKNNAKPAVPFGGKYRIIDFTLSNCSNSGIDTIGVLTQYEPHILNSHIGIGSPWDLDRKRGGVSILPPHMRNDGGNWYMGTAD--AIYQNIMFIDKYDPEYILVLSGDHIYKMDYSKMLQFHKEKNSDATIAVIDVPIEEASRFGIMNTNDD-DKIYEFEEKPEQPKNNKASMGIYIFNWKILKEFLIEDSELEDSDHDFGKNIIPSLLDSGYNLYAYSFNGYWKDVG 247          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 72/247 (29.15%), Postives = 117/247 (47.37%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAK-LGIKII-----CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRDY 814
            A+IL GG GTRL  LT  + KP V F  K  +I   +      G+  V +   Y+P V+   +      + + K  G++I+      ++     GTA  +    + L ++  E   VL+ D +    + ++I++H   G + +I  M   ++E S++G+++  D  G++  F EKP     N  + GIY+ N   L R+    E  P S     K+V PKI  E  G L+A    G+W D+G  R Y
Sbjct:    6 AMILAGGQGTRLGVLTERIAKPAVPFGGKYRLIDFTLSNCVNSGIYRVGVLTQYRPHVLAKHIGIGRPWDLDRKDGGVEILPPYVGRNESDWYKGTANAVYQNLEFLEENDAELVLVLSGDHVYAMNYNDLIDYHLLKGADGTIACMEVPLEEASRFGIMI-TDVEGRIVDFEEKPPKPRSNLASLGIYVFNYEFLKRVLIEDENDPNSSHDFGKDVIPKILRENKGSLYAFRFDGYWRDVGTIRSY 251          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: SPSI_BACSU (Spore coat polysaccharide biosynthesis protein spsI OS=Bacillus subtilis GN=spsI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.009e-15
Identity = 70/246 (28.46%), Postives = 114/246 (46.34%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPT---SIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 853
            MK +IL GG G+RL PLT +V K L+     PMI   I  L+  G+ +++L    Q E M  F K      +LG+ I    +    G +  L+ A+        E F +L  D I E       E  +  G  A +++ +VD+P ++G+  +++   ++   +EKP+    N    GIY+ +  V   IE + P+    +E      + +E  +L   VL G+W+D G         +L   +LRK
Sbjct:    1 MKGVILAGGNGSRLMPLTKAVNKHLLPVGPYPMIYWSIMKLQEAGIKDILLIS--QKEHMPQFYKLLGNGEELGVTITYQVQPAASGISDGLSYAKRFT---KKESFILLLGDNIFEDSLKPYTERFEQQGKGAKVLLKEVDDPERFGIAEIDEKNKRIRSIIEKPEQPPTNLCVTGIYMYDAEVFSYIEQISPSKRGELEITDVNNLYIENSQLTYDVLSGWWVDAGTHESLYLASQLVHQALRK 241          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA2_SHIFL (Glucose-1-phosphate thymidylyltransferase 2 OS=Shigella flexneri GN=rmlA2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 69/260 (26.54%), Postives = 117/260 (45.00%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E+++    + +     L    ++ GI++  +++  P G A    +    L    GEP   VL  ++     F+  +    A    A++   +V +P ++GVV  +D+   +    EKPK    N    G+Y  +  V+         +R EL  TSI +         + L G+ FA      W+D G   D +     ++ ++ K+  FK+A
Sbjct:    1 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFA------WLDTG-THDSLIEASTFVQTVEKRQGFKIA 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA2_ECOLI (Glucose-1-phosphate thymidylyltransferase 2 OS=Escherichia coli (strain K12) GN=rmlA2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 69/260 (26.54%), Postives = 117/260 (45.00%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E+++    + +     L    ++ GI++  +++  P G A    +    L    GEP   VL  ++     F+  +    A    A++   +V +P ++GVV  +D+   +    EKPK    N    G+Y  +  V+         +R EL  TSI +         + L G+ FA      W+D G   D +     ++ ++ K+  FK+A
Sbjct:    1 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFA------WLDTG-THDSLIEASTFVQTVEKRQGFKIA 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.143e-14
Identity = 73/265 (27.55%), Postives = 119/265 (44.91%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIIC-----SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++PKP V FA K  I+   +       +  V +   Y+P  +  ++    A        GI I+      +Q +   GTA  +    D +     E   +L+ D I +  + EM+  HK    E ++    V  +E S++GV+V  D+ G++ +F EKP     N  + G+Y+ N  VL       E  P S     K V P++  +G +L++ +  G+W D+G    Y       L   R    F+L
Sbjct:    8 AMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYINMGSAWDLNCLNGGIHILPPFVGEAQGSWYKGTANAIYQNMDFINFYNPEYILILSGDHIYQMDYYEMLSCHKQKHAEVTLSAIAVPWEEASRFGVMV-TDAGGRIIRFEEKPPRPESNLASMGVYIFNWDVLKEALLEDERDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVDKFFEL 271          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.493e-14
Identity = 72/265 (27.17%), Postives = 119/265 (44.91%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKIIC-----SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++PKP V FA K  I+   +       +  V +   Y+P  +  ++    A        GI I+      +Q +   GTA  +    D +     E   +L+ D I +  + EM+ +HK    E ++    V  +E S++GV+V  D+ G++ +F EKP     N  + G+Y+    VL       E  P S     K V P++  +G +L++ +  G+W D+G    Y       L   R    F+L
Sbjct:    8 AMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYINMGSAWDLNCLNGGIHILPPFVGEAQGSWYKGTANAIYQNMDFINFYNPEYILILSGDHIYQMDYYEMLSYHKQKHAEVTLSAIAVPWEEASRFGVMV-TDAGGRIIRFEEKPPRPESNLASMGVYIFKWDVLKEALLEDEQDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVDKFFEL 271          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THESQ (Glucose-1-phosphate adenylyltransferase OS=Thermotoga sp. (strain RQ2) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14
Identity = 68/247 (27.53%), Postives = 114/247 (46.15%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFL----------KEFEAKLGIKIICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH--KAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRDY 814
            A+IL GG GTRL  LT  + KP V F  K  +I   +      G+  V +   Y+P V+   +          K+   ++    +   E++   GTA  +    + L ++  E   +L+ D +    + ++I++H  K   G  + M   ++E S++G+++  D  G++  F EKP     N  + GIY+ N   L ++    E  P S     K+V P+I  E  G L+A    G+W D+G  R Y
Sbjct:    6 AMILAGGQGTRLGVLTERIAKPAVPFGGKYRLIDFTLSNCVNSGIYRVGVLTQYRPHVLSKHIGIGRPWDLDRKDGGVEILPPYVGRHESDWYKGTANAVYQNLEFLEENDAELVLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMI-TDVDGRIVDFEEKPAKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSY 251          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
GLMU_META34.334e-2229.21Bifunctional protein glmU OS=Methanococcus aeolicu... [more]
RFBF_BACSU2.907e-1829.58Probable glucose-1-phosphate cytidylyltransferase ... [more]
GLGC_CLONN1.764e-1527.35Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_THENN2.304e-1529.15Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
SPSI_BACSU3.009e-1528.46Spore coat polysaccharide biosynthesis protein sps... [more]
RMLA2_SHIFL8.753e-1526.54Glucose-1-phosphate thymidylyltransferase 2 OS=Shi... [more]
RMLA2_ECOLI8.753e-1526.54Glucose-1-phosphate thymidylyltransferase 2 OS=Esc... [more]
GLGC_DESHD1.143e-1427.55Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHY1.493e-1427.17Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_THESQ3.326e-1427.53Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
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