CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THEMA (Glucose-1-phosphate adenylyltransferase OS=Thermotoga maritima GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.326e-14
Identity = 68/247 (27.53%), Postives = 114/247 (46.15%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFL----------KEFEAKLGIKIICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH--KAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRDY 814
            A+IL GG GTRL  LT  + KP V F  K  +I   +      G+  V +   Y+P V+   +          K+   ++    +   E++   GTA  +    + L ++  E   +L+ D +    + ++I++H  K   G  + M   ++E S++G+++  D  G++  F EKP     N  + GIY+ N   L ++    E  P S     K+V P+I  E  G L+A    G+W D+G  R Y
Sbjct:    6 AMILAGGQGTRLGVLTERIAKPAVPFGGKYRLIDFTLSNCVNSGIYRVGVLTQYRPHVLSKHIGIGRPWDLDRKDGGVEILPPYVGRHESDWYKGTANAVYQNLEFLEENDAELVLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMI-TDVDGRIVDFEEKPAKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSY 251          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_OCEIH (Bifunctional protein glmU OS=Oceanobacillus iheyensis GN=glmU PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 58/187 (31.02%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNK----INAGIYLLNPAVL 688
            A+IL  G GTR++     + K L   A +PM+ H ++ L+ V + ++V  + +  E       + +A+LG     + + E LGT   +  A D L D+ G       ++ +I    F E+I++HK  G +ASI+ TKV+ P+ YG VV  D   +VE+ VE      G +    IN G Y  +   L
Sbjct:    6 AVILAAGQGTRMKS---KLHKMLHPVAGRPMVQHVVDQLQQVNLNKIVTIVGFGAE-------KVKAQLGSSSEFAFQKEQLGTGHAVLQAEDLLKDEKGVTVVACGDTPLIRAETFEELIQYHKKTGAKASILTTKVENPTGYGRVVRNDQ-DEVERIVEHKDANEGERLIQEINTGTYCFDNQAL 181          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_CARHZ (Bifunctional protein glmU OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glmU PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 73/263 (27.76%), Postives = 116/263 (44.11%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNK----INAGIYLLNPAVLDRI--ELRPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKLATGANIV 892
            M+ +IL  G GTR++     +PK + E A KPM+L   EAL   GV  VV  + Y+ E +   L+      G  +I  QE E LGT G  AL     ++D        ++ ++       +I+ H   G  A+++   +  P  YG +V  D  GK+ K VE+    +  K    +N GIY  N  +L  I   L+  + +KE     V P +   GK+   +      ++    D +   RL     R+K+   +  G  I+
Sbjct:    1 MEGIILAAGKGTRMKS---DLPKVVHEVAEKPMVLRVYEALVGAGVKRVVAVVGYRKEKVEEILR------GRAVIAVQE-EQLGT-GHAALVAMPYVEDENVIIVPGDTPLLKASTLQALIKKHLETGAYATVLTCFLSNPYGYGRIV-RDGYGKIIKIVEEKDATLEEKQIAEVNTGIYCFNTKILKEILPLLKAENAQKEYYLTDVIPLLLERGKVVETITIQDETEVYGVNDRVQLARLTKGVYRRKAEALMQEGVTII 251          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_FERNB (Glucose-1-phosphate adenylyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 67/244 (27.46%), Postives = 113/244 (46.31%), Query Frame = 2
Query:  146 LILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEAKL---GIKII--CSQETEPL---GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-------SIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 814
            LIL GG GTRL  LT  +PKP V+F  K  I+   +      G+  + +   Y+P ++   +   K ++      G+ I+   S  TE +   GTA  +    + + +   E   VL+ D I    ++E + +H + G  A+I  M   + E  ++G++V  D   K+ +F EKPK    N  + GIY+     +  + +  +          K + PKI   GK++A    G+W D+G  + Y
Sbjct:    7 LILAGGQGTRLGVLTEKIPKPAVQFGGKYRIIDFTLSNCVNSGIYRIGVLTQYRPHLLNKHIGIGKPWDLDRKGGGVTILQPYSTLTESVWYKGTADAVYQNIEFVDEYNPEYIVVLSGDHIYSMDYSEFVYYHISKGALATIACMEVPITEAHRFGIMV-TDIENKIIEFQEKPKNPKSNLASLGIYVFTWNFIKEVLIEDSKDNSSDHDFGKNIIPKILSTGKVYAYPFEGYWQDVGTIQSY 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THEP1 (Glucose-1-phosphate adenylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 68/247 (27.53%), Postives = 114/247 (46.15%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFL----------KEFEAKLGIKIICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH--KAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----ELRPTS---IEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRDY 814
            A+IL GG GTRL  LT  V KP + F  K  +I   +      G+  V +   Y+P V+   +          K+   ++    +   E++   GTA  +    + L ++  E   +L+ D +    + ++I++H  K   G  + M   ++E S++G+++  +  GK+  F EKP     N  + GIY+ N   L ++    E  P S     K+V P+I  E  G L+A    G+W D+G  R Y
Sbjct:    6 AMILAGGQGTRLGVLTERVAKPAIPFGGKYRLIDFTLSNCVNSGIYRVGVLTQYRPHVLSKHIGIGRPWDLDRKDGGVEILPPYVGRHESDWYKGTANAVYQNLEFLEENDAELVLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMI-TNVDGKIVDFEEKPAKPRSNLASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSY 251          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACCN (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 76/265 (28.68%), Postives = 124/265 (46.79%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKII-----CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIEL---RPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP  + N++    A        G+ ++      S      GTA  +    + L     E   +L+ D I +  +++M+++H A   + SI V +V  DE S++G++   +    VE F EKP+    N  + GIY+ N A+L + +E+    P S     K+V P +  EG KL A    G+W D+G  +         +D LR +S  +L
Sbjct:    9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCSNSGIETVGILTQYQPLELHNYIGIGNAWDLDRVNGGVTVLPPYAEASGVKWYTGTASAIYQNMNFLRQYNPEYVLILSGDHIYKMDYSKMLDYHIAKEADVSISVIEVPWDEASRFGIMNTNEEMEIVE-FEEKPQFPKSNLASMGIYIFNWAILKEYLEMDARNPDSSNDFGKDVLPLLLDEGKKLIAYPFQGYWKDVGTVKSL---WEANMDLLRDESLLQL 269          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA_RHISN (Probable glucose-1-phosphate thymidylyltransferase OS=Rhizobium sp. (strain NGR234) GN=rmlA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 73/272 (26.84%), Postives = 126/272 (46.32%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIELRPTS---IEKEVFPKIALE-GKLFAMVL-PGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLATGANI---VGNVLVHESA 919
            MK +IL GG GTRL P+TL + K ++   +KPMI + +  L   G+ E+++        +   L    ++ GI +  + +  P G A    +  D +    G P   +L  ++   +    +++   A    A+I    V++P +YGVV  ++    +    EKP          G+Y  +  V+D    L+P++    E     +I LE GKL   VL  G+ W+D G P D +     ++ +L K+ +FK+A    +   +G + V E A
Sbjct:    1 MKGIILAGGSGTRLHPMTLVMSKQILPVYDKPMIFYPLTTLMLAGIREILIISTPHHMPLFQALLGDGSQWGISLRYAVQPSPNGLAQAYVIGADFV---AGSPSCLILGDNIYFGHGLQGLLQQAAALQQGATIFAYHVNDPERYGVVEFDEGMNAL-SIEEKPAAPKSTWAVTGLYFYDSEVVDIAANLKPSARGEYEITDVNRIYLERGKLKVAVLGRGYAWLDTGTP-DSLLEAAEFVRTLEKRQAFKVACPEEVALAMGFISVEEFA 267          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACWK (Glucose-1-phosphate adenylyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 74/265 (27.92%), Postives = 123/265 (46.42%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKII-----CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIELRPTSIE------KEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP  + N++    A        G+ ++      S      GTA  +    + L     E   +L+ D I +  +++M+++H     + SI V +V  DE S++G++   +    VE F EKP+    N  + GIY+ N A+L + +E+   + E      K+V P +  EG KL A    G+W D+G  +         +D LR ++S  L
Sbjct:    9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVNGGVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEVVE-FEEKPQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSL---WEANMDLLRDETSLNL 269          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACHK (Glucose-1-phosphate adenylyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 73/265 (27.55%), Postives = 122/265 (46.04%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEP------LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIELRPTSIE------KEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP  + N++      + +   G   +     E        GTA  +    + L     E   +L+ D I +  +++M+++H     + SI V +V  DE S++G++   +    VE F EKP+    N  + GIY+ N A+L + +E+   + E      K+V P +  EG KL A    G+W D+G  +         +D LR ++S  L
Sbjct:    9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVSGGVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVE-FEEKPQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSL---WEANMDLLRDETSLNL 269          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACCZ (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 73/265 (27.55%), Postives = 122/265 (46.04%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEP------LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIELRPTSIE------KEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSFKL 871
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP  + N++      + +   G   +     E        GTA  +    + L     E   +L+ D I +  +++M+++H     + SI V +V  DE S++G++   +    VE F EKP+    N  + GIY+ N A+L + +E+   + E      K+V P +  EG KL A    G+W D+G  +         +D LR ++S  L
Sbjct:    9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVSGGVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVE-FEEKPQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSL---WEANMDLLRDETSLNL 269          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
GLGC_THEMA3.326e-1427.53Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLMU_OCEIH4.344e-1431.02Bifunctional protein glmU OS=Oceanobacillus iheyen... [more]
GLMU_CARHZ4.344e-1427.76Bifunctional protein glmU OS=Carboxydothermus hydr... [more]
GLGC_FERNB4.344e-1427.46Glucose-1-phosphate adenylyltransferase OS=Fervido... [more]
GLGC_THEP15.674e-1427.53Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_BACCN5.674e-1428.68Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
RMLA_RHISN1.264e-1326.84Probable glucose-1-phosphate thymidylyltransferase... [more]
GLGC_BACWK1.264e-1327.92Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_BACHK1.264e-1327.55Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_BACCZ1.264e-1327.55Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
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