CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA3_ECOLX (Glucose-1-phosphate thymidylyltransferase OS=Escherichia coli GN=rmlA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.398e-12
Identity = 64/255 (25.10%), Postives = 120/255 (47.06%), Query Frame = 2
Query:  134 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD--RIELRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  D +  D  +   VL  ++   +   +++E        A++    V++P +YGVV   D+ G      EKP     N    G+Y  +  V++  R  L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I     ++ ++ ++   K++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEDFIGGD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF-DNNGTAISLEEKPLEPKSNYAVTGLYFYDNDVVEMARKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FIATIEERQGLKVS 253          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACLD (Glucose-1-phosphate adenylyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.825e-12
Identity = 68/244 (27.87%), Postives = 112/244 (45.90%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------KLGIKII-----CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAV----LDRIELRPTS---IEKEVFPKIALEGK-LFAMVLPGFWMDIGQPR 808
            A++L GG G+RL  LT ++ KP V F  K  I+   +      G+  V +   YQP ++ +++   E         G+ I+      S+     GTA  +   R  L +   E   +L+ D I +  + +M+E+H     +A+I V +V   E  ++G++   D   ++  F EKPK    N  + G+Y+   +V    L+R E    S     K+V P +  E K L A    G+W D+G  R
Sbjct:    7 AMLLAGGKGSRLNALTKNLAKPAVPFGGKYRIIDFALSNCANSGIHHVGVLTQYQPLLLNSYIGIGEPWDLDRNDGGVSILSPYAEASEVKWYKGTASAIYENRHFLKELQPEHVLILSGDHIYKMDYGKMLEYHAEKQADATIAVIEVSWAEAGRFGILHTNDKM-EITSFEEKPKYPKSNLASMGVYVFKWSVLEDALERDEKNSASSHDFGKDVIPALLEENKRLNAYPFKGYWKDVGTVR 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_EUBE2 (Glucose-1-phosphate adenylyltransferase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glgC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 68/246 (27.64%), Postives = 114/246 (46.34%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQP-----EVMLNFLKEFEAKL-GIKII----CSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYL-----LNPAVLDRIELRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDY 814
            M A++L GG G+RL  LT  V KP V F  K  I+   +      G+  V +   YQP      + +    + +  + G+ ++     SQ +E   GTA  +    + +     E   +L+ D I +  +  M+++HKA+  + +I  M   ++E S++GVVV  D+  K+ +F EKP+    N  + GIY+     L  A++   + +     K V P      K +FA    G+W D+G    Y
Sbjct:    6 MIAMLLAGGQGSRLGVLTSKVAKPAVAFGGKYRIIDFPLSNCINSGIDTVGVLTQYQPLRLNTHIGIGIPWDLDRNVGGVSVLPPYEKSQNSEWYTGTANAIYQNLEYMEQYHPEYVLILSGDHIYKMDYKIMLDYHKANNADITIAAMPVPMEEASRFGVVV-TDNDNKITEFEEKPEHPKSNLASMGIYIFSWKVLKDALIKLKDQQECDFGKHVIPYCFNNNKRIFAYEYNGYWKDVGTLSSY 250          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA_SALTY (Glucose-1-phosphate thymidylyltransferase OS=Salmonella typhimurium GN=rmlA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 62/254 (24.41%), Postives = 120/254 (47.24%), Query Frame = 2
Query:  134 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   +++E        A++    V++P +YGVV   D  G      EKP     N    G+Y  + +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I     ++ ++ ++   K++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF-DQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FIATIEERQGLKVS 252          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THEM4 (Glucose-1-phosphate adenylyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 60/245 (24.49%), Postives = 109/245 (44.49%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEAKL---GIKIICSQETEPLGT----AGPLALARDKLIDDTGEPFFV-LNSDVISEYPFAEMIEFHKAHG--GEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIE-------KEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 814
            ALIL GG GTRL  LT  + KP V+F  K  +I   +      G+ ++ +   Y+P ++   +   K ++      G+ I+    TE +G           +  + +D     + V L+ D I    + E++++H A    G  + M   + E +++G++V  D   ++ +F EKPK       + GIY+     +  + +     E       K++ PKI    +++A    G+W D+G    Y
Sbjct:    6 ALILAGGQGTRLGVLTEKIAKPAVQFGGKYRLIDFTMSNCVNSGIYKIGVLTQYKPHLLNRHIGIGKPWDLDRKDGGVTILQPYSTEKVGVWYKGTADAVYSNIEFVDSYSPDYVVILSGDHIYSMDYNELVDYHVAKSALGTVACMEVPLSEANRFGIMV-TDLENRIIEFQEKPKFPKSTLASLGIYVFQWNFIREVLMEDAKDENSTHDFGKDIIPKIINTKRVYAFPFEGYWKDVGTIYSY 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_THELT (Glucose-1-phosphate adenylyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 67/247 (27.13%), Postives = 113/247 (45.75%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEPL-----GTAGPLALARDKLIDDTGEPFFV--LNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEK-------EVFPKIALEG-KLFAMVLPGFWMDIGQPRDY 814
            ALIL GG G RL  LT  + KP V F  K  +I   +      G+  V +   Y+P ++ N +      + + K G   I       +     GTA   A+ ++    D+ +P FV  L+ D +    + ++I+FH   G E +I   +V  +E +++G ++M D   ++  F EKP+    N  + GIY+ N   L    +R     +       ++ P +  EG +++A    G+W D+G  R Y
Sbjct:    6 ALILAGGHGKRLGVLTEKIAKPAVPFGGKYRLIDFTLSNCVNSGIYHVGVLTQYRPHLLNNHINIGRPWDLDRKKGGVTILPPYLGGVAGWYRGTAN--AVYQNIEYVDSADPDFVLILSGDHVYAMDYNDIIDFHILKGAEGTIACIEVPPEETNRFG-IMMTDLDSRIVDFEEKPQRARSNLASLGIYVFNWKFLKEYLIRDEQNNESTHDFGHDIIPLMINEGCQIYAFKFNGYWRDVGTVRSY 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_BACCL (Glucose-1-phosphate adenylyltransferase (Fragment) OS=Bacillus caldolyticus GN=glgC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 65/248 (26.21%), Postives = 113/248 (45.56%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNF------------------LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN-PAVLDRIEL------RPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIG 799
            A++L GG G+RLR LT ++ KP V F  K  I+   +      G+  V +   YQP ++ ++                  L  + A  G+K          GTA  +    + +     +   VL+ D I +  + +M+++H A   +A+I V +V  +E S++G++   ++   VE F EKP     N  + GIY+ N P + + +++            K+V P++  E K L A    G+W D+G
Sbjct:    7 AMLLAGGQGSRLRSLTKNIAKPAVPFGGKYRIIDFTLSNCTNSGIDTVGVLTQYQPLLLHSYIGIGSAWDLDRRNGGVTVLPPYSASSGVKWY-------EGTANAIYQNMNYIEQYDPDYVLVLSGDHIYKMDYQQMLDYHIAKQADATISVIEVPWEEASRFGIMNTNENMEIVE-FAEKPANPKSNLASMGIYIFNWPLLREYLQIDNADPHSSHDFGKDVIPRLLRENKRLVAYPFKGYWKDVG 246          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_FUSNN (Glucose-1-phosphate adenylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=glgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 68/243 (27.98%), Postives = 109/243 (44.86%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLK-----EFEAKLGIKIICSQETEP-------LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK---VDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLN----PAVLDRIELRPTS---IEKEVFPKIALEG-KLFAMVLPGFWMDIG 799
            A+IL GG GTRL+ LT  + KP V F  K  I+   +      G+  V +   Y+P ++ N +      + +   G   +    T          GTA  +      + +   E   +L+ D I +  + +M++FH     +A+I V K   VD PS +G++  +D    + +F EKPK    +  + GIY+ N       LD  E  P S     K + P +  +G K+FA    G+W D+G
Sbjct:   10 AMILAGGQGTRLKELTEDLAKPAVAFGGKYRIIDFTLTNCSNSGIDTVGVLTQYEPRILNNHIGRGSPWDLDRMDGGVTVLQPHTRKNDEKGWYKGTANAIYQNIKFIEEYDPEYVLILSGDHIYKMNYDKMLQFHIQKDADATIGVFKVPLVDAPS-FGIMNTKDDM-SIYEFEEKPKEPKSDLASMGIYIFNWKLLKKYLDEDEKDPNSSNDFGKNIIPNMLNDGKKMFAYPFKGYWRDVG 250          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_MYCMO (Glucose-1-phosphate adenylyltransferase OS=Mycoplasma mobile GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL---------GIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL----DRIELRPTSIE---KEVFPKIALE-GKLFAMVLPGFWMDIG 799
            M A+IL GG GTRL+ LT  + KP V F  K  I+   +      G+  V +   Y+P   L+ LK   + +         G+ ++     E       GTA  +    D + +       +L+ D I +  +++M++FHK      +I    V  +E S++G++   ++   VE+F EKPK+    K + G+Y+ N  +L    + ++ +  + +     + P I  +  K+FA    G+W D+G
Sbjct:    6 MIAMILAGGQGTRLKNLTKKIAKPAVPFGAKYRIIDFTLSNCINSGIDTVGVLTQYRP---LSLLKHIGSGIPFDLNRLNGGVVLLSPYVKESEGYWYAGTAHAIFENIDFMNEYDPTYALILSGDHIYKMDYSKMLDFHKEKNANVTIATINVSFEEASRFGILNTNEN-NMVEEFEEKPKIPKSTKASMGVYIFNYQLLKDTFEELKSKGNNFQDFGHNILPYILKKYSKIFAYEFNGYWKDVG 247          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_CLOBA (Glucose-1-phosphate adenylyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 67/243 (27.57%), Postives = 114/243 (46.91%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQP-----EVMLNFLKEFEAK-LGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFV--LNSDVISEYPFAEMIEFHKAHGGEASIMVTK--VDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-------ELRPTSIEKEVFPKIALE-GKLFAMVLPGFWMDIG 799
            A+IL GG G+RL  LT  + KP V F  K  I+   +      G+  V +   Y+P      + +    + + K  G+ I+   + E       GTA   A+ ++    D  +P +V  L+ D I +  + +M+EFHK    +A+I V +  V+E S++G++   D    + +F EKPK+   N  + GIY+ N   L +        +       K++ P +  + GK+ A    G+W D+G
Sbjct:    8 AMILAGGQGSRLGVLTKKLAKPAVPFGGKYRIIDFPLSNCANSGIYTVGVLTQYKPLELNAHIGIGLPWDLDRKDGGVSILPPYQEEKGGNWYKGTAN--AIYQNIEFVDRYDPEYVLILSGDHIYKMNYTKMLEFHKEKNADATIGVIEVPVNEASRFGIMNTRDDM-SIYEFEEKPKIPKSNLASMGIYIFNWKTLKKYLRNDEANKSSSNDFGKDIIPSMLNDGGKMVAYPFEGYWKDVG 247          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RMLA3_ECOLX1.398e-1225.10Glucose-1-phosphate thymidylyltransferase OS=Esche... [more]
GLGC_BACLD1.825e-1227.87Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_EUBE22.384e-1227.64Glucose-1-phosphate adenylyltransferase OS=Eubacte... [more]
RMLA_SALTY3.113e-1224.41Glucose-1-phosphate thymidylyltransferase OS=Salmo... [more]
GLGC_THEM43.113e-1224.49Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_THELT3.113e-1227.13Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_BACCL3.113e-1226.21Glucose-1-phosphate adenylyltransferase (Fragment)... [more]
GLGC_FUSNN4.066e-1227.98Glucose-1-phosphate adenylyltransferase OS=Fusobac... [more]
GLGC_MYCMO5.311e-1226.02Glucose-1-phosphate adenylyltransferase OS=Mycopla... [more]
GLGC_CLOBA5.311e-1227.57Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
back to top