CV884723

Overview
NameCV884723
Unique NameCV884723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9268 contig Csv1_Contig9268:307..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_CLOAB (Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 65/241 (26.97%), Postives = 106/241 (43.98%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQPEVMLNFL------KEFEAKLGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-------ELRPTSIEKEVFPK-IALEGKLFAMVLPGFWMDIG 799
            A+IL GG G+RL  LT    KP V F  K  I+   +      G+  V +   Y+P  + + +             G+ ++     E       GTA  +   R  + +   E   +L+ D I +  + EM++FHK    +A+I V +V  +E S++G ++  D   ++ +F EKPK    N  + GIY+ N   L R        E       K + P  +  + KL+A    G+W D+G
Sbjct:    8 AMILAGGQGSRLGILTRRTAKPAVPFGGKYRIIDFTLSNCSNSGIDTVGVLTQYKPLALNSHIGIGSPWDLDRTSGGVSVLPPYMKETGGNWYKGTANAIYQNRHFIENYDPEYVVILSGDHIYKMNYLEMLDFHKKKNADATIAVFEVPLNEASRFG-IMNTDEDDRINEFEEKPKKPKNNLASMGIYIFNWRFLKRFLEEDARDESSNNDFGKNIIPNMLNKKRKLYAYRFNGYWKDVG 247          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: YTDA_BACSU (Putative UTP--glucose-1-phosphate uridylyltransferase OS=Bacillus subtilis GN=ytdA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.936e-12
Identity = 70/280 (25.00%), Postives = 124/280 (44.29%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT-------------------------GEPF-FVLNSDVI---SEYPFAEMIE-FHKAHGGEASIMVTKVDEPSKYGVV---VMEDSTGKVEKFVEKPKLFVGNKI-NAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKL-----FAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSS 862
            KA+I  GGFGTR  P+T  +PK +    +KP+I + +E LK  G+ ++++ ++    +++++   F++ L ++         L +   L L R+  I D                          GEPF  VL  D+I   ++    ++IE + K       +  TK ++   YGV+    +E    +++  VEKPK    +    AG Y+  P + + +E        EV    A++  L     +  +L G   DIG  +DY   L+L  D L+ + +
Sbjct:    4 KAIIPAGGFGTRNLPVTKVIPKEMFPVGSKPVIHYLVEELKESGIEDILMVVSSHKNLIVDY---FDSSLALEAF-------LASKNKLHLLREHPIPDIRIHYVRQPYAKGLGDAISFGKQFAGGEPFAVVLPDDLIFSANQPALGQLIEAYTKYQSSVIGLKETKTEDLHHYGVIKGEPVEKGLYRIQDIVEKPKQNPPSHFAAAGRYIFTPDIFNELEALEADSGGEVQVTDAIKASLGACTVYGKLLEGERYDIGLQKDY---LKLIYDMLKTEKN 270          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA1_SHIFL (Glucose-1-phosphate thymidylyltransferase 1 OS=Shigella flexneri GN=rmlA1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.936e-12
Identity = 60/254 (23.62%), Postives = 122/254 (48.03%), Query Frame = 2
Query:  134 TMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTS---IEKEVFPKIAL-EGKL-FAMVLPGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            T K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q       L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++++        A++    V++P +YGVV  +D+ G      EKP+    N    G+Y  +  V++  + L+P++   +E     +I + +G+L  AM+  G+ W+D G  +  I     ++ ++ ++   K++
Sbjct:    3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKLMDTAVNRESGATVFAYHVNDPERYGVVEFDDN-GTAISLEEKPQEPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMDQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FIATIEERQGLKVS 252          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLGC_CLOBB (Glucose-1-phosphate adenylyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glgC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 67/243 (27.57%), Postives = 114/243 (46.91%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-HQIEALKAVGVTEVVLAINYQP-----EVMLNFLKEFEAK-LGIKIICSQETEP-----LGTAGPLALARDKLIDDTGEPFFV--LNSDVISEYPFAEMIEFHKAHGGEASIMVTK--VDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-------ELRPTSIEKEVFPKIALE-GKLFAMVLPGFWMDIG 799
            A+IL GG G+RL  LT  + KP V F  K  I+   +      G+  V +   Y+P      + +    + + K  G+ I+   + E       GTA   A+ ++    D  +P +V  L+ D I +  + +M+EFHK    +A+I V +  V+E S++G++   D    + +F EKPK+   N  + GIY+ N   L +        +       K++ P +  + GK+ A    G+W D+G
Sbjct:    8 AMILAGGQGSRLGVLTKKLAKPAVPFGGKYRIIDFPLSNCANSGIYTVGVLTQYKPLELNAHIGIGLPWDLDRKDGGVSILPPYQEEKGGNWYKGTAN--AIYQNIEFVDRYDPEYVLILSGDHIYKMNYTKMLEFHKEKNADATIGVIEVPVNEASRFGIMNTRDDM-SIYEFEEKPKIPKSNLASMGIYIFNWKTLKKYLRNDEANKGSSNDFGKDIIPSMLNDGGKMVAYPFEGYWKDVG 247          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 49/184 (26.63%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 691
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ KL   I+C  +   +GTA  L     KL  D      VL  D+I++    E+++  +A+    ++++ K  E ++     +    GK +   ++  + V +     +++ N A LD
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--KDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDV----LVLGCDLITDVALHEVVDLFRAYDASLAMLMRKGQESTE----PVPGQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLD 177          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA_YEREN (Glucose-1-phosphate thymidylyltransferase OS=Yersinia enterocolitica GN=rmlA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 59/253 (23.32%), Postives = 120/253 (47.43%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-ELRPT---SIEKEVFPKIAL-EGKLFAMVL-PGF-WMDIGQPRDYITGLRLYLDSLRKKSSFKLA 874
            MK ++L GG GTRL P+T  V K L+   +KPMI + I  L   G+ ++++    +       L    ++ GI++  +++  P G A    +  + +  +      VL  ++     F + +    +    A++   +V +  ++GV+  +++   +    EKP+    +    G+Y  +  V++   E++P+    +E     ++ L +GKL   +L  GF W+D G   D +    L++ ++ K+  FK+A
Sbjct:    1 MKGIVLAGGAGTRLHPITRGVSKQLLPVYDKPMIYYPISVLMLAGIQDILIISTPEDLPSFKRLLGDGSQFGIRLQYAKQPSPDGLAQAFIIGEEFIAGE--RCALVLGDNIYFGQSFGKQLREVASRNDGATVFGYQVVDAERFGVIEFDENFNAL-SIEEKPQKPKSDWAVTGLYFYDKDVVEMAKEIKPSERGELEITTLNEMYLAKGKLRVELLGRGFAWLDTG-THDSLIDASLFIHTIEKRQGFKVA 249          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_PELPD (Bifunctional protein glmU OS=Pelobacter propionicus (strain DSM 2379) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 51/187 (27.27%), Postives = 92/187 (49.20%), Query Frame = 2
Query:  143 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVL 688
            A+IL  G GTR++   + V  P+   A +PMI   +EA +  G   VVL + +Q E +    + F+      I C+ + E LGT   +A A   L   +G    +  ++ ++      +++ FH++ G   +++  +++ P  YG  V+ D  G+V + VE+    P+     +IN+GIY +    L
Sbjct:    6 AIILAAGKGTRMKSGLVKVLHPI---AGRPMIDWPLEAARGAGAAPVVLVVGHQAEAV---RERFQG--AGDIACALQAEQLGTGHAVACAAPALAGFSGTVLILCGDTPLLRGGTLTDLLAFHRSQGAAVTVLTARMENPHGYG-RVLRDEAGRVLRIVEQKDASPQECSVREINSGIYCMEAGFL 183          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: GLMU_DESRM (Bifunctional protein glmU OS=Desulfotomaculum reducens (strain MI-1) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 53/206 (25.73%), Postives = 103/206 (50.00%), Query Frame = 2
Query:  137 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEK----PKLFVGNKINAGIYLLN-PAVLDRI-ELRPTSIEKEVF 733
            + A+IL  G GTR++    ++PK L +   +PM+ H + ++ A GV + V+   +  E + +F       +G K     + E LGTA  L  A  +L D  G    V  ++ ++     A++ ++H   G  A+++  ++ +P+ YG V+   + G V   VE+    P+    ++IN G+Y    P + + + E+ P +++ E +
Sbjct:    3 LAAVILAAGKGTRMKS---NLPKVLHQLCGRPMLSHVLNSVVAAGVDKTVVVAGFGAEQVTDF-------VGEKARVVLQREQLGTAHALLQAEGELTDYPGHLLVVCGDTPLLRAETLAKLADYHCESGAVATLLTAEMADPTGYGRVI-RTTEGNVSHIVEQKDASPEELNVHEINTGVYCFKVPGLFNALKEISPANVQGEYY 197          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA_XANCP (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris GN=rmlA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 691
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV    D  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEF-DQHGKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
BLAST of CV884723 vs. ExPASy Swiss-Prot
Match: RMLA_XANCB (Glucose-1-phosphate thymidylyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rmlA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 2
Query:  140 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP-FFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEDSTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 691
            K +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ ++++      + +   L    A+ G+ I  + +  P G A    + RD +    G+P   VL  ++   +   + +    A    A++    V++P +YGV    D  GKV    EKP+    N    G+Y  +    D
Sbjct:    5 KGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIINTPHEQALFQSLLGDGAQWGVNIQYAVQPSPDGLAQAYLIGRDFV---GGKPSCLVLGDNIFHGHGLTDTLRRADAREQGATVFGYWVNDPERYGVAEF-DQHGKVIDIAEKPEKPRSNYAVTGLYFYDGKASD 185          
The following BLAST results are available for this feature:
BLAST of CV884723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
GLGC_CLOAB5.311e-1226.97Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
YTDA_BACSU6.936e-1225.00Putative UTP--glucose-1-phosphate uridylyltransfer... [more]
RMLA1_SHIFL6.936e-1223.62Glucose-1-phosphate thymidylyltransferase 1 OS=Shi... [more]
GLGC_CLOBB9.058e-1227.57Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
EI2BG_RAT9.058e-1226.63Translation initiation factor eIF-2B subunit gamma... [more]
RMLA_YEREN1.545e-1123.32Glucose-1-phosphate thymidylyltransferase OS=Yersi... [more]
GLMU_PELPD1.545e-1127.27Bifunctional protein glmU OS=Pelobacter propionicu... [more]
GLMU_DESRM1.545e-1125.73Bifunctional protein glmU OS=Desulfotomaculum redu... [more]
RMLA_XANCP2.018e-1127.57Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]
RMLA_XANCB2.018e-1127.57Glucose-1-phosphate thymidylyltransferase OS=Xanth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884723 ID=CV884723; Name=CV884723; organism=Citrus sinensis; type=EST; length=920bp
CGAGCGCGCGAGCTCGCCTCATCCGTTGACTGAGCTGTCGGTCCCGAGTC
ACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTGCCGTTCGGATCCG
GTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAATGAAGGCACTTAT
TCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCTTAGTGTCC
CTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGCATCAGATA
GAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCTATTAACTA
CCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGCAAAGCTTG
GGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCACTGCTGGT
CCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGTGAGCCATT
TTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGCAGAAATGA
TTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGGTAACCAAG
GTGGATGAGCCATCAAAATATGGTGTGGTGGTTATGGAAGACTCTACTGG
AAAAGTTGAGAAATTCGTAGAGAAACCTAAATTATTTGTTGGTAACAAAA
TTAATGCTGGAATTTATCTTTTGAACCCTGCGGTTCTTGATCGCATTGAG
CTGAGGCCCACCTCCATTGAGAAAGAGGTCTTTCCAAAAATTGCTTTAGA
GGGAAAGCTCTTCGCGATGGTTCTTCCAGGTTTCTGGATGGACATTGGAC
AGCCGAGGGATTACATTACAGGCTTGAGACTCTATCTGGACTCCCTGAGG
AAGAAGTCCTCATTCAAGTTGGCCACTGGTGCTAACATTGTAGGCAATGT
CTTGGTGCATGAGAGTGCTC
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