CV884716

Overview
NameCV884716
Unique NameCV884716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3363 contig Csv1_Contig3363:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV +       F SV DD  L++WD R  T+  P   V+ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF WN ++PW                 +QIW+M++ IY  ++
Sbjct:  225 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDEE 412          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP7_XENLA (Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV +       F SV DD  L++WD R  T+  P   V+ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF WN ++PW                 +QIW+M++ IY  ++
Sbjct:  225 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDEE 412          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP7_BOVIN (Histone-binding protein RBBP7 OS=Bos taurus GN=RBBP7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 71/210 (33.81%), Postives = 105/210 (50.00%), Query Frame = -2
Query:  249 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQ--DEVLAELE 869
            H   VEDV +       F SV DD  L++WD R  T S    +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF WN ++PW                 +QIW+M++ IY  +  D    ELE
Sbjct:  225 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDEESDVTTPELE 421          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 70/202 (34.65%), Postives = 103/202 (50.99%), Query Frame = -2
Query:  270 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQD 869
            H   VEDV++       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ I   +D
Sbjct:  226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQVWQMAENINNDED 413          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: CAF1_DROME (Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 68/210 (32.38%), Postives = 107/210 (50.95%), Query Frame = -2
Query:  249 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVL--AELE 869
            H   VEDV +       F SV DD  L++WD R   TS       AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ DF WN ++PW                 +Q+W+M++ +Y  ++  +  +ELE
Sbjct:  230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEEPEIPASELE 426          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: RBBP7_PONAB (Histone-binding protein RBBP7 OS=Pongo abelii GN=RBBP7 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 71/211 (33.65%), Postives = 106/211 (50.24%), Query Frame = -2
Query:  249 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQ--DEVLAELE 869
            H   VEDV +       F SV DD  L++WD R  T S    +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +   V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF WN ++PW                 +QIW+M++ IY  +  D   +ELE
Sbjct:  225 HSAVVEDVAWHLLHESLFGSVADDQKLMMWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQVVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDEESDVTTSELE 422          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 62/202 (30.69%), Postives = 109/202 (53.96%), Query Frame = -2
Query:  267 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG-KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDE 869
            HE  + DV++   +   F S G+D  L++WD R  T+ +    K H+ +++ + +NP ++ ++ T S+D++V +FD R L +     P++    H   V  V+W P+  +V  SS ED  L +WD  +VG +++E      + P  L F H GH+ K+ DF WN ++PW                +LQ+W+M++ IYR +++
Sbjct:  216 HESAIADVSWHMKNENLFGSAGEDGRLVIWDTR--TNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNA-----PLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPW-------VIASVAEDNSLQVWQMAESIYRDEED 403          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.483e-24
Identity = 62/206 (30.10%), Postives = 101/206 (49.03%), Query Frame = -2
Query:  255 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAE 869
            HE  VEDV +       F SVGDD  L++WD R    S  ++   AH  +++C+ +NP ++ ++ TGS D +V++FD R L+     + ++ F+ H   V  V W+P   ++  S      L +WD  ++ ++ +      + P  L F H GH  K+ DF WN  + W                 LQIW+M++ IY  +D+   E
Sbjct:  226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLS-----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE-QTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-------VISSVAEDNILQIWQMAENIYHDEDDAPGE 418          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: HAT2_CRYNE (Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans GN=HAT2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = -2
Query:  366 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP-RTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 869
            H   V DV + P +   F SV DD  +++WD R   T+      + H+A+++C+ + P  + L LTGS+DN++ ++D R L++       + FE H+  VL + WSP     F S++ D  ++IWD + +G   EQ P    + P  L F H GH  KV D  W+ S PW
Sbjct:  239 HSAYVADVEWHPKNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISFAPSSEYLFLTGSSDNTIALWDLRKLSTKH-----HSFEAHTNDVLQLSWSPTSPVHFASASADRRVHIWDLDAIG--AEQTPDDAEDGPPELLFVHGGHTSKVCDISWSPSSPW 401          
BLAST of CV884716 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = -2
Query:  264 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEV 869
            HE  VEDV +       F SVGDD  L +WD R    T P+  V  AH ++++C+ +NP ++ ++ TGS D +V++FD R      + + ++  + H   V  V W+P   ++  S      L +WD  ++ +  EQ P    + P  L F H GH  K+ DF WN  + W                 LQIW+M++ IY  +D++
Sbjct:  226 HEGVVEDVAWHLRHEYLFGSVGDDQYLHVWDLRTPSVTKPIQSVV-AHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK-----ISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE--EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-------VVASVAEDNILQIWQMAENIYHDEDDL 415          
The following BLAST results are available for this feature:
BLAST of CV884716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RBBP7_XENTR1.414e-2733.66Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]
RBBP7_XENLA1.414e-2733.66Histone-binding protein RBBP7 OS=Xenopus laevis GN... [more]
RBBP7_BOVIN1.414e-2733.81Histone-binding protein RBBP7 OS=Bos taurus GN=RBB... [more]
RBBP4_CHICK1.414e-2734.65Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
CAF1_DROME7.016e-2732.38Probable histone-binding protein Caf1 OS=Drosophil... [more]
RBBP7_PONAB1.197e-2633.65Histone-binding protein RBBP7 OS=Pongo abelii GN=R... [more]
MSI2_ARATH1.563e-2630.69WD-40 repeat-containing protein MSI2 OS=Arabidopsi... [more]
MSI1_ARATH9.483e-2430.10WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
HAT2_CRYNE2.759e-2334.71Histone acetyltransferase type B subunit 2 OS=Cryp... [more]
MSI1_SOLLC8.028e-2331.22WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884716 ID=CV884716; Name=CV884716; organism=Citrus sinensis; type=EST; length=870bp
TTTTTTTTTGTATAAAAGATGGTCAGAAACCTTCATCATACAACCTCATT
TCTTGAAACGTATAGTCTACTAAAATACAACTAAATAAAGGATACCAATC
AATTTCCAAGTGTCTAGTGTACCCAATAGCTCAATAAAGATGATAAACTA
CAAGAAGTTCTAGACATCTAAACAAGTGCTCTACGATTTCTTATCACTCG
GTTGACTCAAGGCTTTGAAGTACATGAAATTACGTGGGCCTTGAACTTCT
CAAGCTCTGCTAAAACCTCATCTTGCGGCCGATAGATCAAATCACTCATG
CGCCATATCTGCAGTGTTCCTCCTCCACCAGTAGAATCGCAGTCATCAGA
GACACTAACAACAGTCCATGGATCCGATGCATTCCAGTGGAAGTCAACAA
CTTTGTCCCTGTGCCCAGCATGCTGGAAAAACAAGCCTGCAGGATAATTA
GTGGTTCTTGGCCCCTGCTCCACCTTTTTACCAACCTTCTCATAGTCCCA
AATGTTTAAGAGACCATCCTCTGCAGAGCTTCCAAATACAGACGACTTGT
CTGGAGACCACTGAACACAGAGAACAGCGGCACTGTGACCTTCAAATTTA
TTGATAGGCGATCCAACTCCGTTAGAAGTGAGATTACGCCGATCAAACAT
GCGGACAGAGTTATCAGCTGACCCGGTAAGGATAAGATTATCATCAAGGG
GATTCCAGTCAACACAGTGAAGATCAGCATCATGTGCTTTTTCAACCTTA
ATGACTGGGCTTGTGCCAACTCGAGCATCCCATAATATAAGGCATGAGTC
ATCACCAACGCTACAGAACTCCTGCGCACTGGATGGACAGAATGTCACAT
CTTCAACTGTATCCTCATGC
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