CV884712

Overview
NameCV884712
Unique NameCV884712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA12_ORYSJ (Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.037e-34
Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  500 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFED 943
            EA +L  LKFE+ +PT K FLRR  RVAQ       L LEFL  Y+AELSLL+Y  + + PS VAAS IFLA+FI QP+KHPW ++L  Y+ YK SE+  CV  LH L+    G NL A+REKY QHK K VA     P +P  +F D
Sbjct:  328 EASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHK-KFVAKKHCPPSVPSEFFRD 474          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA11_ARATH (Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.954e-31
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = -2
Query:  500 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFED 943
            E+D+L  LKFE+ +PT K FLRR  R A   + A  +QLE +  Y+AELSLL+Y  +   PS VAAS IFLA++I  P++ PW ++LQ Y+ YK  E+ GCV  L  L  +  G  L AVREKY QHK+K VA       IP  +F +
Sbjct:  312 ESDVLNYLKFEMTAPTTKCFLRRFVRAAHGVHEAPLMQLECMANYIAELSLLEYTMLSHSPSLVAASAIFLAKYILDPTRRPWNSTLQHYTQYKAMELRGCVKDLQRLCSTAHGSTLPAVREKYSQHKYKFVAKKFCPSVIPQEFFNN 459          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCF32_ORYSJ (Putative cyclin-F3-2 OS=Oryza sativa subsp. japonica GN=CYCF3-2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.082e-31
Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = -2
Query:  494 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYFEDIK 943
            EA+IL  L F++GSPTV TFLRR     +      N++LE +  YLAELSLLD   ++FLPS VAA+ +F+ +F   P+  PW  S+QR +GYK S+IE C+  +HDL   R+  NL+A+R KY+   F+ V+T PS   I   +  D+K
Sbjct:  253 EANILSFLNFQMGSPTVITFLRRFLFSCRGSNRPINIRLELMCIYLAELSLLDDYNIRFLPSIVAAACLFVGKFTLNPNTRPWNLSVQRITGYKVSDIEDCIRSIHDLQAGRKWSNLRAIRSKYEDDAFERVSTIPSPNTIKPSFLRDLK 402          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA24_ARATH (Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.549e-30
Identity = 67/146 (45.89%), Postives = 96/146 (65.75%), Query Frame = -2
Query:  506 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCYF 943
            E+ +LK   F++ +PT KTFLRR  R AQ  +   +L++EFL  YL EL+L+DY  +KFLPS +AAS +FLA++    S HPW  +L+ Y+ YK S+++  V  L DL L+ +G +L ++R KY+Q KFK VA   SS E+P   F
Sbjct:  315 ESQVLKHFSFQIYTPTSKTFLRRFLRAAQVSFPNQSLEMEFLANYLTELTLMDYPFLKFLPSIIAASAVFLAKWTLNQSSHPWNPTLEHYTTYKASDLKASVHALQDLQLNTKGCSLNSIRMKYRQDKFKSVAVF-SSGELPDKLF 459          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA22_ARATH (Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.816e-29
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = -2
Query:  509 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIPGCY 943
            E  IL  + F L  PT KTFLRR  + AQ  Y    ++LE+L  YLAEL+L++Y+ ++FLPS +AAS +FLAR+    + HPW  +LQ Y+ Y+ +E++  VL + DL L+  G  L A REKY Q KFK VA   S   +   +
Sbjct:  290 EIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLANYLAELTLVEYSFLRFLPSLIAASAVFLARWTLDQTDHPWNPTLQHYTRYEVAELKNTVLAMEDLQLNTSGCTLAATREKYNQPKFKSVAKLTSPKRVTSLF 434          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA21_ORYSJ (Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.816e-29
Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = -2
Query:  521 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEI 943
            E  +L  + F L  PT KTFLRR  R AQ   N  ++ L +L  YLAEL+L+DY+ +KFLPS VAAS +FLAR+    S  PW  +L+ Y+ YK S+I+ CV  L +L  +     L A+REKY+Q KF+CVA   +SPE+
Sbjct:  345 EGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVPSITLGYLANYLAELTLIDYSFLKFLPSVVAASAVFLARWTLDQSDIPWNHTLEHYTSYKSSDIQICVCALRELQHNTSNCPLNAIREKYRQQKFECVANL-TSPEL 484          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA23_ARATH (Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 6.508e-29
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  533 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPS 943
            E  +LK   F++ +PT KTFLRR  R AQ    + +L++EFL  YL EL+L+DY  +KFLPS VAAS +FLA++    S HPW  +L+ Y+ YK S+++  V  L DL L+ +G  L A+R KY+Q K+K VA   S
Sbjct:  306 ENQVLKHFSFQIYTPTPKTFLRRFLRAAQASRLSPSLEVEFLASYLTELTLIDYHFLKFLPSVVAASAVFLAKWTMDQSNHPWNPTLEHYTTYKASDLKASVHALQDLQLNTKGCPLSAIRMKYRQEKYKSVAVLTS 442          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA21_ARATH (Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.398e-28
Identity = 64/140 (45.71%), Postives = 86/140 (61.43%), Query Frame = -2
Query:  524 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPE 943
            E  +L SL F L  PT KTFLRR  R AQ       +++E+L  Y AEL+L +Y  ++FLPS +AAS +FLAR+    S HPW  +LQ Y+ Y+ S ++  VL + +L L+  G  L A+  KY Q KFK VAT  +SPE
Sbjct:  298 EIKVLNSLHFRLSVPTTKTFLRRFIRAAQASDKVPLIEMEYLANYFAELTLTEYTFLRFLPSLIAASAVFLARWTLDQSNHPWNQTLQHYTRYETSALKNTVLAMEELQLNTSGSTLIAIHTKYNQQKFKRVATL-TSPE 436          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCA12_ARATH (Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.092e-27
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = -2
Query:  518 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTPSSPEIP 943
            E+ +L  LKFEL +PT K FLRR  R AQ      +L  E L  YL ELSLLDYA +++ PS VAAS +FLA++   PS+ PW A+L+ Y+ Y+   +E CV  L  L   +   ++ A+R+KY QHK+K  A       +P
Sbjct:  296 ESSVLNYLKFELTTPTAKCFLRRFLRAAQGRKEVPSLLSECLACYLTELSLLDYAMLRYAPSLVAASAVFLAQYTLHPSRKPWNATLEHYTSYRAKHMEACVKNLLQLCNEKLSSDVVAIRKKYSQHKYKFAAKKLCPTSLP 437          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNA_CHLVR (G2/mitotic-specific cyclin-A (Fragment) OS=Chlorohydra viridissima PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  542 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVAT 934
            ILK+L F+L  PT + FL R    A     +   QL++L  YL+EL+L++    VK+ PS +AAS I +A  +   +  PWT +L+ YSGY   ++  C+  +H L+L+      QA+++KYK  KF CV++
Sbjct:  285 ILKTLAFDLSVPTCRDFLSRYLFAANAKPES---QLKYLAEYLSELTLINCDISVKYAPSMIAASSICVANHML--NSIPWTPTLEFYSGYNIQDLRSCLNEIHLLHLAASTNPQQAIQQKYKSPKFGCVSS 411          
The following BLAST results are available for this feature:
BLAST of CV884712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CCA12_ORYSJ1.037e-3452.70Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA11_ARATH6.954e-3147.30Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=... [more]
CCF32_ORYSJ9.082e-3145.33Putative cyclin-F3-2 OS=Oryza sativa subsp. japoni... [more]
CCA24_ARATH1.549e-3045.89Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=... [more]
CCA22_ARATH3.816e-2944.14Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=... [more]
CCA21_ORYSJ3.816e-2947.52Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA23_ARATH6.508e-2946.72Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=... [more]
CCA21_ARATH9.398e-2845.71Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=... [more]
CCA12_ARATH6.092e-2743.66Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=... [more]
CCNA_CHLVR1.408e-1537.88G2/mitotic-specific cyclin-A (Fragment) OS=Chloroh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884712 ID=CV884712; Name=CV884712; organism=Citrus sinensis; type=EST; length=944bp
GGTCATATTGCAGAGAACTGCAATTCAATCTCATTAGCTGGCTAAAAGTG
TTTATATGATGCTTCCTCATGGAGTTGATTTATACAAATGAGAATTTACA
TCATTCAACTTGTGAACTAAAGAAACACATACTAAAACTAATAAGAAGTC
TAGCCGTCAACATGGCCCCCCAGCATTTCTCAAACAATTAGAAATCCCCT
TCTCTAGCAGAGAAAGATGTTCCAATGTCACTATTAGTAGCTGCTTGCAT
TACCAGTGCCATTCATACAATTCAAAAGTCTCTAATCACCAGAGTGCTAG
CAATGACAAGAGCTGCTCCTCCCAGCATTTCACCACAAGCAATCAATTTC
AAAGATCTCTTCCACCAATAGAGACCAGTGATATGCTCACTAAAAAATCA
ATCTTCTGAGTTAGAACACTAGTTAGCAACTTTTAAACCAGATCTCTTTT
GCCAATAATAACTCAAATAACAAATGCCAGTCCAACTTCAATCTTTGATA
TCTTCAAAGTAACAACCAGGTATCTCTGGAGAAGAAGGGGTGGTTGCCAC
ACATTTGAACTTATGTTGCTTGTATTTTTCTCTTACAGCTTGCAAATTCC
CTCCTCTTCTACTCAAATAGAGGTCATGTAGGACAAGAACACAGCCTTCT
ATTTCAGATGGTTTGTATCCAGAGTATCGTTGCAAGCTAGCAGTCCAGGG
ATGCTTTGATGGTTGGGTAATGAATCTTGCCAGGAATATAACAGATGCAG
CAACTGAAGAGGGCAAAAATTTCACACAAGCATAATCTAATAGACTCAGT
TCTGCAAGATAGTATCCAAGGAACTCTAGTTGCAAATTGGAAGCATTGTA
ATCCTCTTGTGCAACCCTGGTTAATCGCCTCAAAAATGTCTTGACAGTGG
GACTTCCCAATTCAAACTTCAAGGACTTGAGTATATCGGCCTCC
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