CV884712

Overview
NameCV884712
Unique NameCV884712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNB_DICDI (G2/mitotic-specific cyclin-B OS=Dictyostelium discoideum GN=cycB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  536 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTP 943
            E  IL +L+F +   T   FLRR ++ A  D    +L       YL+ELS+++Y  V+F+PS +AA+ I++AR +T  S   W  +L+ Y+ YK SEI  C   L ++       NL+A R+KY   K   VA  P
Sbjct:  302 ERQILSTLQFHMSVATPLHFLRRFSKAAGSDSRTHSLSK-----YLSELSMVEYRMVQFVPSMIAAASIYVARRMTMKSGPYWNVTLEYYTCYKESEILQCAQELKEVRKRADTSNLKATRKKYLSSKLMEVAAIP 432          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCF31_ORYSJ (Putative cyclin-F3-1 OS=Oryza sativa subsp. japonica GN=CYCF3-1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  638 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCV 943
            E DIL+ L F++GSPTV TFLR+         N+SN +LE +  YLAELSLLD   ++FLPS VAA+ +F+ +F   P+  PW  S+   +   P  I+G V
Sbjct:  235 ELDILRFLNFDVGSPTVITFLRKFLTSCCGGNNSSNRKLELMCNYLAELSLLDDYYIRFLPSIVAAACLFVGKFTLNPNTRPWFGSVSTIT--PPENIKGGV 334          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCB31_ARATH (Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  572 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKY 943
            E  +LK LKF L +PT   F+ R  + AQ     SN +LE L +YL EL L++Y  +K+ PS + AS I++AR  T      WT+ L  ++ Y  S+++ C  ++   + + + GNL+   EKY
Sbjct:  260 ERSMLKQLKFRLNAPTPYVFMLRFLKAAQ-----SNKKLEQLAFYLIELCLVEYEALKYKPSLLCASAIYVAR-CTLHMTPVWTSLLNNHTHYNVSQMKDCSDMILRFHKAAKTGNLRVTYEKY 377          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNA1_HUMAN (Cyclin-A1 OS=Homo sapiens GN=CCNA1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  545 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVA 934
            +LK L F+L  PT   FL +  R          ++ E L  Y+AELSLL+    +K+LPS +AA+   LA +    +KH W  +L  ++GY  SEI  C+  LH  YL       QA+REKYK  K+ CV+
Sbjct:  331 LLKVLAFDLTVPTTNQFLLQYLR-----RQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTV--NKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVS 454          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCB21_ORYSJ (Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = -2
Query:  539 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATT 934
            IL +L+F +  PT   F+RR  + AQ D      QL+ L +++ ELSL++Y  +K+ PS +AA+ ++ A+      +  WT + + +S Y   ++  C  ++ D +     G L  V  KY   KF C A T
Sbjct:  274 ILNTLQFNMSVPTPYVFMRRFLKAAQSDK-----QLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQCALTRCQQ-WTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKLTGVHRKYSTFKFGCAAKT 399          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCB21_ORYSI (Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = -2
Query:  539 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATT 934
            IL +L+F +  PT   F+RR  + AQ D      QL+ L +++ ELSL++Y  +K+ PS +AA+ ++ A+      +  WT + + +S Y   ++  C  ++ D +     G L  V  KY   KF C A T
Sbjct:  274 ILNTLQFNMSVPTPYVFMRRFLKAAQSDK-----QLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQCALTRCQQ-WTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKLTGVHRKYSTFKFGCAAKT 399          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNA_PATVU (G2/mitotic-specific cyclin-A OS=Patella vulgata PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.935e-13
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  530 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVA--TTPSS 934
            ILK L F++  PT+  F     ++A  D    +L +     YL+EL+L+D    +K+LPS++AA+ + LA  IT  S+ PW +SL + S Y+ SE   C+  ++  YL+      QA+REKYK  K++ V+  + PSS
Sbjct:  291 ILKVLSFDVAQPTINWFTDTYAKMADTDETTKSLSM-----YLSELTLVDADPYLKYLPSTIAAASLCLAN-ITLGSE-PWPSSLAKESKYEISEFSECLQEMYQTYLNAPNHPQQAIREKYKSSKYQQVSSISPPSS 421          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNA2_CHICK (Cyclin-A2 OS=Gallus gallus GN=CCNA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  545 ILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDY-ACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVA 934
            ILK L F+L +PT+  FL +     Q     +N ++E L  YL EL+L+D    +K+LPS +AA+   LA +    +   W  SL + +GY    I+ C++ LH  YL       Q++REKYK  K+  V+
Sbjct:  262 ILKVLSFDLAAPTINQFLTQYFLHQQ-----TNAKVESLSMYLGELTLIDADPYLKYLPSVIAAAAFHLASYTI--TGQTWPESLCKVTGYTLEHIKPCLMDLHRTYLKAAQHTQQSIREKYKSTKYHAVS 385          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNB_HYDAT (G2/mitotic-specific cyclin-B (Fragment) OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = -2
Query:  536 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVATTP 943
            E  +LK+ +++  +P    FLRR ++    D      Q   L  YL EL+L++Y  +  LPS +AA+ ++LA  +   S   WT +L  YSGY   EI   V  L  L LS      QAV+ KY   KF  ++  P
Sbjct:  219 EQKMLKTCEYDFSNPLCLHFLRRNSKAGAVD-----AQKHTLAKYLMELTLVEYEFITKLPSEIAAAALYLALKLIDDSN--WTPTLAHYSGYTEDEILSTVSKLSILTLSMDNSKYQAVKNKYSASKFLRISLIP 347          
BLAST of CV884712 vs. ExPASy Swiss-Prot
Match: CCNB1_MEDVA (G2/mitotic-specific cyclin-1 OS=Medicago varia PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.238e-12
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = -2
Query:  545 EADILKSLKFELGSPTVKTFLRRLTRVAQEDYNASNLQLEFLGYYLAELSLLDYACVKFLPSSVAASVIFLARFITQPSKHPWTASLQRYSGYKPSEIEGCVLVLHDLYLSRRGGNLQAVREKYKQHKFKCVA 943
            E  ++ +LKF +  PT   F+RR  + AQ D      +LE L ++L ELSL++YA +KF PS +AA+ ++ A+  T      W+ + + ++ Y   ++  C  ++ D +     G L     KY   KF   A
Sbjct:  289 EKVMVNALKFNISVPTAYVFMRRFLKAAQADR-----KLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQ-CTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTA 415          
The following BLAST results are available for this feature:
BLAST of CV884712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CCNB_DICDI1.838e-1536.76G2/mitotic-specific cyclin-B OS=Dictyostelium disc... [more]
CCF31_ORYSJ2.401e-1545.10Putative cyclin-F3-1 OS=Oryza sativa subsp. japoni... [more]
CCB31_ARATH1.317e-1336.29Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CY... [more]
CCNA1_HUMAN1.721e-1338.93Cyclin-A1 OS=Homo sapiens GN=CCNA1 PE=1 SV=1[more]
CCB21_ORYSJ2.247e-1331.82Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCB21_ORYSI2.247e-1331.82Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2... [more]
CCNA_PATVU2.935e-1336.96G2/mitotic-specific cyclin-A OS=Patella vulgata PE... [more]
CCNA2_CHICK6.539e-1335.88Cyclin-A2 OS=Gallus gallus GN=CCNA2 PE=2 SV=1[more]
CCNB_HYDAT2.485e-1234.56G2/mitotic-specific cyclin-B (Fragment) OS=Hydra a... [more]
CCNB1_MEDVA4.238e-1230.83G2/mitotic-specific cyclin-1 OS=Medicago varia PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884712 ID=CV884712; Name=CV884712; organism=Citrus sinensis; type=EST; length=944bp
GGTCATATTGCAGAGAACTGCAATTCAATCTCATTAGCTGGCTAAAAGTG
TTTATATGATGCTTCCTCATGGAGTTGATTTATACAAATGAGAATTTACA
TCATTCAACTTGTGAACTAAAGAAACACATACTAAAACTAATAAGAAGTC
TAGCCGTCAACATGGCCCCCCAGCATTTCTCAAACAATTAGAAATCCCCT
TCTCTAGCAGAGAAAGATGTTCCAATGTCACTATTAGTAGCTGCTTGCAT
TACCAGTGCCATTCATACAATTCAAAAGTCTCTAATCACCAGAGTGCTAG
CAATGACAAGAGCTGCTCCTCCCAGCATTTCACCACAAGCAATCAATTTC
AAAGATCTCTTCCACCAATAGAGACCAGTGATATGCTCACTAAAAAATCA
ATCTTCTGAGTTAGAACACTAGTTAGCAACTTTTAAACCAGATCTCTTTT
GCCAATAATAACTCAAATAACAAATGCCAGTCCAACTTCAATCTTTGATA
TCTTCAAAGTAACAACCAGGTATCTCTGGAGAAGAAGGGGTGGTTGCCAC
ACATTTGAACTTATGTTGCTTGTATTTTTCTCTTACAGCTTGCAAATTCC
CTCCTCTTCTACTCAAATAGAGGTCATGTAGGACAAGAACACAGCCTTCT
ATTTCAGATGGTTTGTATCCAGAGTATCGTTGCAAGCTAGCAGTCCAGGG
ATGCTTTGATGGTTGGGTAATGAATCTTGCCAGGAATATAACAGATGCAG
CAACTGAAGAGGGCAAAAATTTCACACAAGCATAATCTAATAGACTCAGT
TCTGCAAGATAGTATCCAAGGAACTCTAGTTGCAAATTGGAAGCATTGTA
ATCCTCTTGTGCAACCCTGGTTAATCGCCTCAAAAATGTCTTGACAGTGG
GACTTCCCAATTCAAACTTCAAGGACTTGAGTATATCGGCCTCC
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