CV884711

Overview
NameCV884711
Unique NameCV884711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA11_ORYSJ (Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 99/163 (60.74%), Postives = 129/163 (79.14%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            D+D   +DPQ+C    +DIY  +H  E + ++RP  D++E +QKDV+ +MR +L+DWLVEVAEEY+LV DTLYLT++YIDR+LS N +NRQ+LQLLGV+ MLIA+KYEEI  P VE+FCYITDNTY +DEV++MEA +L  LKFE+ +PT K FLRR  RVAQ
Sbjct:  226 DVDNNYEDPQLCATLASDIY--MHLREAETRKRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYEEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQ 386          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA13_ORYSJ (Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=3 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.463e-52
Identity = 97/163 (59.51%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            D+D   +DPQ+C    +DIY  +H  E + ++ P  D++E +QKDV+ +MR +L+DWLVEVAEEY+LV DTLYLT++YIDR+LS N +NRQ+LQLLGV+ MLIA+KY+EI  P VE+FCYITDNTY +DEV++MEA +L  LKFE+ +PT K FLRR  RVAQ
Sbjct:  209 DVDNNYEDPQLCATLASDIY--MHLREAETRKHPSTDFMETLQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYKEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEMTAPTAKCFLRRFVRVAQ 369          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA24_ARATH (Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.370e-50
Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            +DID+   DP +C  Y  DIY  L   E+  KRRP PD++EK Q+DV+  MRG+LVDWLVEV+EEY LV DTLYLT+  ID FL  N + RQ+LQLLG++ MLIASKYEEI  P +E+FC+ITDNTYT+D+V++ME+ +LK   F++ +PT KTFLRR  R AQ
Sbjct:  182 VDIDSDDKDPLLCSLYAPDIYYNLRVAEL--KRRPFPDFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRLQLLGITCMLIASKYEEIHAPRIEEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKTFLRRFLRAAQ 343          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA21_ORYSJ (Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.370e-50
Identity = 99/164 (60.37%), Postives = 126/164 (76.83%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            IDID  + +PQ+C +Y ++IY  L + E+   RRP  +Y+E +Q+D++  MRG+L+DWLVEV+EEYKLV DTLYLTI+ IDRFLS + + RQKLQLLG++SMLIASKYEEI  P VE+FC+ITDNTYTK EV+KME  +L  + F L  PT KTFLRR  R AQ
Sbjct:  212 IDIDNDNGNPQMCASYASEIYTNLMASELI--RRPRSNYMEALQRDITKGMRGILIDWLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQ 373          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA23_ARATH (Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.336e-50
Identity = 96/164 (58.54%), Postives = 126/164 (76.83%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            +DID+   DP +C  Y  +I+  L   E+  KRRPLPD++E++QKDV+ +MRG+LVDWLVEV+EEY L SDTLYLT+  ID FL  N + RQ+LQLLG++ MLIASKYEEIS P +E+FC+ITDNTYT+D+V++ME  +LK   F++ +PT KTFLRR  R AQ
Sbjct:  173 VDIDSDDKDPLLCCLYAPEIHYNLRVSEL--KRRPLPDFMERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLLGITCMLIASKYEEISAPRIEEFCFITDNTYTRDQVLEMENQVLKHFSFQIYTPTPKTFLRRFLRAAQ 334          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA21_ARATH (Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 6.797e-50
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            +DID+   DPQ C  Y   IY  ++  E++  +RP   Y+ +VQ+D+   MRG+L+DWLVEV+EEYKLVSDTLYLT++ IDRF+S N + +QKLQLLG++ MLIASKYEEIS P +E+FC+ITDNTYT+ EV+ ME  +L SL F L  PT KTFLRR  R AQ
Sbjct:  165 VDIDSGVQDPQFCSLYAASIYDSINVAELE--QRPSTSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQKLQLLGITCMLIASKYEEISAPRLEEFCFITDNTYTRLEVLSMEIKVLNSLHFRLSVPTTKTFLRRFIRAAQ 326          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA22_ARATH (Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.583e-49
Identity = 94/164 (57.32%), Postives = 123/164 (75.00%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            +DID+  +DPQ C  Y  DIY  +H  E+  ++RPL +Y+E VQ+D+  +MR +L+DWLVEV+++YKLV DTLYLT++ IDRFLS + + RQ+LQLLGVS MLIASKYEE+S P VE+FC+IT NTYT+ EV+ ME  IL  + F L  PT KTFLRR  + AQ
Sbjct:  157 VDIDSNVEDPQCCSLYAADIYDNIHVAEL--QQRPLANYMELVQRDIDPDMRKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQLLGVSCMLIASKYEELSAPGVEEFCFITANTYTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQ 318          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCA12_ARATH (Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.406e-49
Identity = 89/164 (54.27%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  304 IDIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQ 795
            ++ID+   DPQ+C ++  DIY++L   EV+  +RP  DY+E+ Q  ++A+MR +L+DWLVEVAEEY+L  +TLYL ++Y+DR+L+ N +N+Q LQLLGV+ M+IA+KYEE+  P VEDFCYITDNTY ++E+++ME+ +L  LKFEL +PT K FLRR  R AQ
Sbjct:  163 VNIDSDLMDPQLCASFACDIYEHLRVSEVN--KRPALDYMERTQSSINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQNLQLLGVTCMMIAAKYEEVCVPQVEDFCYITDNTYLRNELLEMESSVLNYLKFELTTPTAKCFLRRFLRAAQ 324          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNB2_ORYJA (G2/mitotic-specific cyclin-B2 OS=Oryzias javanicus GN=ccnb2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.165e-39
Identity = 81/166 (48.80%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  307 DIDAR-SDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            D+D + +D PQ+C  YV DIY+YLH++E     RP  +Y++     V+ +MR +LVDWLV+V   ++L+ +TLYLT++ +DRFL ++ ++R+KLQL+GV++ML+A KYEE+ PP V DF YITD+ +TK ++V+ME  IL+SL F+LG P    FLRR ++VA  D
Sbjct:  104 DVDEQDADQPQLCSQYVKDIYKYLHTLEEQQAIRP--NYMQGYS--VTEHMRALLVDWLVQVHSRFQLLQETLYLTVAILDRFLQVHPVSRRKLQLVGVTAMLVACKYEEMYPPEVGDFAYITDDAFTKFQIVEMEQVILRSLGFQLGRPLPLHFLRRASKVADAD 265          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNB2_ORYLU (G2/mitotic-specific cyclin-B2 OS=Oryzias luzonensis GN=ccnb2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.571e-38
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  307 DIDAR-SDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            D+D + +D PQ+C  YV DIY+YLH +E     R   +Y++  +  V+  MR +LVDWLV+V   ++L+ +TLYLT++ +DRFL ++ ++R+KLQL+GV++ML+A KYEE+  P V DF YITDN +TK ++V+ME  IL+SL F+LG P    FLRR T+VA  D
Sbjct:  108 DVDEQDADQPQLCSQYVKDIYKYLHVLEEQQPVRA--NYMQGYE--VTERMRALLVDWLVQVHSRFQLLQETLYLTVAILDRFLQVHPVSRRKLQLVGVTAMLVACKYEEMYTPEVADFSYITDNAFTKSQIVEMEQVILRSLSFQLGRPLPLHFLRRATKVAGAD 269          
The following BLAST results are available for this feature:
BLAST of CV884711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CCA11_ORYSJ1.013e-5360.74Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA13_ORYSJ1.463e-5259.51Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA24_ARATH1.370e-5058.54Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=... [more]
CCA21_ORYSJ1.370e-5060.37Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCA23_ARATH2.336e-5058.54Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=... [more]
CCA21_ARATH6.797e-5057.93Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=... [more]
CCA22_ARATH2.583e-4957.32Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=... [more]
CCA12_ARATH4.406e-4954.27Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=... [more]
CCNB2_ORYJA3.165e-3948.80G2/mitotic-specific cyclin-B2 OS=Oryzias javanicus... [more]
CCNB2_ORYLU1.571e-3848.80G2/mitotic-specific cyclin-B2 OS=Oryzias luzonensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884711 ID=CV884711; Name=CV884711; organism=Citrus sinensis; type=EST; length=801bp
CTCCTCCTCTCTTGAGTCCCAAATTGAGTGAACATTAGTTTGCTAATGGC
GGATCAAGAGAACTTTGTTAGGGTCACACGGGCAGCGGCCAAGAAGAGGG
CGGCCTCCGGAAGTGCCTTGGAGCAGCCGGCCAAAAAGAAGCGGGTGGTC
TTGGGGGAGTTGCCCACCAACACAAACGTCGTCGTCTCGGTGAATCCGAG
TCTCAAGGCTGAGCCGCGTAAAGCCAAGGCCAAAGCGAAGAAGGCTTTGC
TAACGGAAAAGACCAAGGCCAAGGCCAAGACCAAGGCAACCGAGTATGCT
GATATTGACATTGATGCCAGATCCGACGACCCTCAGATCTGTGGAGCCTA
CGTCACCGACATTTACCAGTATCTTCATTCCATGGAGGTGGATCCAAAGA
GAAGGCCTTTGCCTGATTACGTAGAGAAGGTTCAGAAGGATGTGAGTGCA
AACATGAGAGGGGTGTTGGTTGACTGGTTGGTGGAGGTTGCAGAGGAATA
CAAGCTTGTTTCAGACACCCTCTATCTCACCATTTCGTATATTGATAGGT
TCCTTTCTTTGAATGTTCTCAATCGCCAGAAGCTTCAGCTGCTTGGGGTT
TCTTCAATGCTCATTGCCTCAAAGTATGAGGAAATTAGCCCTCCAAATGT
GGAAGATTTTTGCTACATTACGGATAATACCTACACCAAAGACGAGGTGG
TGAAAATGGAGGCCGATATACTCAAGTCCTTGAAGTTTGAATTGGGAAGT
CCCACTGTCAAGACATTTTTGAGGCGATTAACCAGGGTTGCACAAGAGGA
T
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