CV884711

Overview
NameCV884711
Unique NameCV884711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: APOB_RAT (Apolipoprotein B-100 OS=Rattus norvegicus GN=Apob PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 38/110 (34.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  430 VQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTV 759
            VQK +S  +R +L+ WLVEVA      S  L+LT+  + R+L   ++ R KLQLLG++ M+I + +       + +   +TDNTY   ++V+++ +I+ +L+ ++  PTV
Sbjct: 4580 VQKGLSDTVRYILIGWLVEVAPMKDFTSLCLHLTVECVGRYLQRKLVPRYKLQLLGIACMVICTWFISKEILTIREAVRLTDNTYKYKDLVRVKREIISALEGKIRIPTV 4689          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CG11_CANAL (G1/S-specific cyclin CLN1 OS=Candida albicans GN=CLN1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 37/117 (31.62%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  430 VQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISP--PNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLR 774
            +Q ++   MR  L+D+L+E+   +KL   TL+L ++ IDR+ +  ++ ++  QL+G +++ IASKYE+     P +++   +  N Y ++  V+ME  IL +L + +G PT++  L+
Sbjct:   69 LQPEIQWFMRPFLLDFLIELHSSFKLQPTTLFLCLNIIDRYCAKRIVFKRHYQLVGCTALWIASKYEDKKSRVPTLKELTIMCRNAYDEEMFVQMEMHILSTLDWSIGHPTLEDCLQ 185          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  553 LSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVA 792
            LS+  + R++LQL+ VS+MLI  KYEEI  P V DF +I+D+ YT+++++ ME  IL  L++ L  PT   F+  L+  A
Sbjct:  144 LSMQQVQRRELQLVAVSAMLIDCKYEEIWAPEVNDFIFISDSAYTREQILAMEKGILNKLQWNLTIPTPYVFIMMLSASA 223          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: YL268_MIMIV (Putative serine/threonine-protein kinase L268 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L268 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  442 VSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLS-LNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTV 759
            ++ +MR +L+DWL+EV  EY+ + DTL L I  +D F+  ++ ++R+  Q +G+  M IA+K  E      E+  +I+ + YT D ++  E +IL++L F L   T+
Sbjct:   10 ITLDMRLILIDWLIEVHYEYECIIDTLCLAIILVDEFVDRIDKIDRKYFQCIGICCMNIATKILEPEHIGSENCNFISASQYTTDVIISYEKNILQTLDFHLVRKTI 116          
The following BLAST results are available for this feature:
BLAST of CV884711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
APOB_RAT1.933e-1234.55Apolipoprotein B-100 OS=Rattus norvegicus GN=Apob ... [more]
CG11_CANAL3.298e-1231.62G1/S-specific cyclin CLN1 OS=Candida albicans GN=C... [more]
CCB12_ORYSJ1.253e-1143.75Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
YL268_MIMIV1.637e-1134.58Putative serine/threonine-protein kinase L268 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884711 ID=CV884711; Name=CV884711; organism=Citrus sinensis; type=EST; length=801bp
CTCCTCCTCTCTTGAGTCCCAAATTGAGTGAACATTAGTTTGCTAATGGC
GGATCAAGAGAACTTTGTTAGGGTCACACGGGCAGCGGCCAAGAAGAGGG
CGGCCTCCGGAAGTGCCTTGGAGCAGCCGGCCAAAAAGAAGCGGGTGGTC
TTGGGGGAGTTGCCCACCAACACAAACGTCGTCGTCTCGGTGAATCCGAG
TCTCAAGGCTGAGCCGCGTAAAGCCAAGGCCAAAGCGAAGAAGGCTTTGC
TAACGGAAAAGACCAAGGCCAAGGCCAAGACCAAGGCAACCGAGTATGCT
GATATTGACATTGATGCCAGATCCGACGACCCTCAGATCTGTGGAGCCTA
CGTCACCGACATTTACCAGTATCTTCATTCCATGGAGGTGGATCCAAAGA
GAAGGCCTTTGCCTGATTACGTAGAGAAGGTTCAGAAGGATGTGAGTGCA
AACATGAGAGGGGTGTTGGTTGACTGGTTGGTGGAGGTTGCAGAGGAATA
CAAGCTTGTTTCAGACACCCTCTATCTCACCATTTCGTATATTGATAGGT
TCCTTTCTTTGAATGTTCTCAATCGCCAGAAGCTTCAGCTGCTTGGGGTT
TCTTCAATGCTCATTGCCTCAAAGTATGAGGAAATTAGCCCTCCAAATGT
GGAAGATTTTTGCTACATTACGGATAATACCTACACCAAAGACGAGGTGG
TGAAAATGGAGGCCGATATACTCAAGTCCTTGAAGTTTGAATTGGGAAGT
CCCACTGTCAAGACATTTTTGAGGCGATTAACCAGGGTTGCACAAGAGGA
T
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