CV884711

Overview
NameCV884711
Unique NameCV884711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA2_MESAU (Cyclin-A2 OS=Mesocricetus auratus GN=CCNA2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.729e-35
Identity = 76/143 (53.15%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRR 777
            Y  DI+ YL  ME+  K +P   Y++K Q D++ +MR +LVDWLVEV EEYKL ++TL+L ++YIDRFLS   + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TY+K +V++ME  +LK L F+L +PTV  FL +
Sbjct:  167 YHEDIHTYLREMEI--KCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLNQ 306          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNB_PATVU (G2/mitotic-specific cyclin-B OS=Patella vulgata PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 78/166 (46.99%), Postives = 109/166 (65.66%), Query Frame = 1
Query:  307 DIDARS-DDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            DIDA   D+PQ+   YV DIY Y+  +E     +   +++E   ++V+  MR +L+DWL +V   + L+ +TLYLT+S IDRFL ++ ++R KLQL+GV+SML+ASKYEE+  P V DF YITDN YTK ++  ME  ILK+L F  G P    FLRR ++  Q D
Sbjct:  137 DIDANDKDNPQLVSDYVNDIYHYMRHLEETFAVKA--NFLEG--QEVTGKMRSILIDWLCQVHHRFHLLQETLYLTVSIIDRFLQVHPISRNKLQLVGVTSMLLASKYEEMYAPEVADFVYITDNAYTKADIRTMEQTILKTLDFSFGKPLCLHFLRRNSKAGQVD 298          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA_PATVU (G2/mitotic-specific cyclin-A OS=Patella vulgata PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 76/151 (50.33%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            Y  DIY++L   E + + R  P Y++K Q D++ +MR +LVDW+VEV+EEYKL  +TL+L I+YIDRFLS   + R KLQL+G +SM IASKYEEI PP V +F YITD+TY + +V++ME  ILK L F++  PT+  F     ++A  D
Sbjct:  171 YAEDIYKHLR--EAESRHRSKPGYMKK-QPDITNSMRSILVDWMVEVSEEYKLHRETLFLAINYIDRFLSQMSVLRGKLQLVGAASMFIASKYEEIYPPEVSEFVYITDDTYEQKQVLRMEHLILKVLSFDVAQPTINWFTDTYAKMADTD 318          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA2_MOUSE (Cyclin-A2 OS=Mus musculus GN=Ccna2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFL 771
            Y  DI+ YL  MEV  K +P   Y+++ Q D++ +MR +LVDWLVEV EEYKL ++TL+L ++YIDRFLS   + R KLQL+G ++ML+ASK+EEI PP V +F YITD+TY+K +V++ME  +LK L F+L +PTV  FL
Sbjct:  168 YQEDIHTYLREMEV--KCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFL 305          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA1_XENLA (Cyclin-A1 OS=Xenopus laevis GN=ccna1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.067e-35
Identity = 77/155 (49.68%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  307 DIDARSDDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFL 771
            D      D      Y+ +I+QYL   E+  K RP   Y+ K Q D+++ MR +LVDWLVEV EEYKL ++TLYL ++Y+DRFLS   + R KLQL+G +++L+ASKYEEI PP+V++F YITD+TY+K ++++ME  +LK L F+L  PTV  FL
Sbjct:  150 DDSVTDPDAVAVSEYIHEIHQYLREAEL--KHRPKAYYMRK-QPDITSAMRTILVDWLVEVGEEYKLHTETLYLAMNYLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYSKKQLLRMEHVLLKVLAFDLTVPTVNQFL 301          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA_DROME (G2/mitotic-specific cyclin-A OS=Drosophila melanogaster GN=CycA PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.054e-34
Identity = 74/141 (52.48%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFL 771
            Y  DI +Y    E + K RP P Y+ + QKD+S NMR +L+DWLVEV+EEYKL ++TLYL++ Y+DRFLS   + R KLQL+G ++M IA+KYEEI PP V +F ++TD++YTK +V++ME  ILK L F+L +PT   F+
Sbjct:  203 YQMDILEYFR--ESEKKHRPKPLYMRR-QKDISHNMRSILIDWLVEVSEEYKLDTETLYLSVFYLDRFLSQMAVVRSKLQLVGTAAMYIAAKYEEIYPPEVGEFVFLTDDSYTKAQVLRMEQVILKILSFDLCTPTAYVFI 340          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNB2_RANJA (G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=CCNB2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.376e-34
Identity = 74/167 (44.31%), Postives = 109/167 (65.27%), Query Frame = 1
Query:  304 IDIDARSD-DPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRVAQED 801
            +DIDA    +PQ+C  YV DIY YL   EV    +    Y++ ++  ++  MR +LVDWL++V   ++ + +TLY+ I+ +DRFL +  ++R KLQL+GV+S+L+ASKYEE+  P V DF YITDN YT  ++ +ME  IL+ LKF+LG P    FLRR ++    D
Sbjct:  113 VDIDAEDGGNPQLCSEYVVDIYNYLREREVQQSIKQR--YLDGME--INERMRAILVDWLIQVNSRFQFLQETLYMGIAIMDRFLQVQPISRGKLQLVGVTSLLLASKYEEMYSPEVADFAYITDNAYTTSQIREMEMIILRELKFDLGRPLPLHFLRRASKACSAD 275          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNB1_CARAU (G2/mitotic-specific cyclin-B1 OS=Carassius auratus GN=ccnb1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 71/162 (43.83%), Postives = 109/162 (67.28%), Query Frame = 1
Query:  307 DIDARS-DDPQICGAYVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTRV 789
            D+DA   D+P +C  YV DIY YL  +E++   RP   Y+E    +V+ NMR +L+DWLV+V  ++KL+ +T+Y+T++ IDRFL  + + +++LQL+GV++M IASKYEE+ PP + DF ++TD  YT  ++  ME  IL+ L F  G P    FLRR +++
Sbjct:  121 DVDADDYDNPMLCSEYVKDIYLYLRQLEIEQAVRP--KYLEG--SEVTGNMRAILIDWLVQVQIKFKLLQETMYMTVAVIDRFLQDHPVPKKQLQLVGVTAMFIASKYEEMYPPEIADFAFVTDRAYTTGQIRDMEMKILRVLDFSFGKPLPLQFLRRASKI 278          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCF31_ORYSJ (Putative cyclin-F3-1 OS=Oryza sativa subsp. japonica GN=CYCF3-1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 71/144 (49.31%), Postives = 104/144 (72.22%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDV-SANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRR 777
            YV DI +YL S+E +  RRP+ +YV+++Q  + + ++RG+LVDW+ +VA  + L  +TL+  +SY+DRFLS       KL+LLG +++ +ASKYEEI PP+V +F  +T NTYT  +V KME DIL+ L F++GSPTV TFLR+
Sbjct:  114 YVEDIDRYLRSLEAEQTRRPMINYVQEIQGGIINMDVRGILVDWMADVAYVFNLQEETLHHAVSYVDRFLSKIAFPGDKLKLLGTTALFVASKYEEIHPPHVRNFSAVTVNTYTTQQVSKMELDILRFLNFDVGSPTVITFLRK 257          
BLAST of CV884711 vs. ExPASy Swiss-Prot
Match: CCNA1_RAT (Cyclin-A1 OS=Rattus norvegicus GN=Ccna1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.065e-34
Identity = 74/146 (50.68%), Postives = 105/146 (71.92%), Query Frame = 1
Query:  349 YVTDIYQYLHSMEVDPKRRPLPDYVEKVQKDVSANMRGVLVDWLVEVAEEYKLVSDTLYLTISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEISPPNVEDFCYITDNTYTKDEVVKMEADILKSLKFELGSPTVKTFLRRLTR 786
            Y  +I++YL   EV  + RP   Y+ K Q D++  MR +LVDWLVEV EEYKL ++TLYL ++++DRFLS   + R KLQL+G +++L+ASKYEEI PP+V++F YITD+TYTK ++++ME  +LK L F+L  PT   FL +  R
Sbjct:  167 YAEEIHRYLREAEV--RHRPKAHYMRK-QPDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYTKRQLLRMEHLLLKVLAFDLTVPTTNQFLLQYLR 309          
The following BLAST results are available for this feature:
BLAST of CV884711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CCNA2_MESAU4.729e-3553.15Cyclin-A2 OS=Mesocricetus auratus GN=CCNA2 PE=2 SV... [more]
CCNB_PATVU8.067e-3546.99G2/mitotic-specific cyclin-B OS=Patella vulgata PE... [more]
CCNA_PATVU8.067e-3550.33G2/mitotic-specific cyclin-A OS=Patella vulgata PE... [more]
CCNA2_MOUSE8.067e-3553.90Cyclin-A2 OS=Mus musculus GN=Ccna2 PE=1 SV=1[more]
CCNA1_XENLA8.067e-3549.68Cyclin-A1 OS=Xenopus laevis GN=ccna1 PE=2 SV=1[more]
CCNA_DROME1.054e-3452.48G2/mitotic-specific cyclin-A OS=Drosophila melanog... [more]
CCNB2_RANJA1.376e-3444.31G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=... [more]
CCNB1_CARAU1.797e-3443.83G2/mitotic-specific cyclin-B1 OS=Carassius auratus... [more]
CCF31_ORYSJ1.797e-3449.31Putative cyclin-F3-1 OS=Oryza sativa subsp. japoni... [more]
CCNA1_RAT3.065e-3450.68Cyclin-A1 OS=Rattus norvegicus GN=Ccna1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010B04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884711 ID=CV884711; Name=CV884711; organism=Citrus sinensis; type=EST; length=801bp
CTCCTCCTCTCTTGAGTCCCAAATTGAGTGAACATTAGTTTGCTAATGGC
GGATCAAGAGAACTTTGTTAGGGTCACACGGGCAGCGGCCAAGAAGAGGG
CGGCCTCCGGAAGTGCCTTGGAGCAGCCGGCCAAAAAGAAGCGGGTGGTC
TTGGGGGAGTTGCCCACCAACACAAACGTCGTCGTCTCGGTGAATCCGAG
TCTCAAGGCTGAGCCGCGTAAAGCCAAGGCCAAAGCGAAGAAGGCTTTGC
TAACGGAAAAGACCAAGGCCAAGGCCAAGACCAAGGCAACCGAGTATGCT
GATATTGACATTGATGCCAGATCCGACGACCCTCAGATCTGTGGAGCCTA
CGTCACCGACATTTACCAGTATCTTCATTCCATGGAGGTGGATCCAAAGA
GAAGGCCTTTGCCTGATTACGTAGAGAAGGTTCAGAAGGATGTGAGTGCA
AACATGAGAGGGGTGTTGGTTGACTGGTTGGTGGAGGTTGCAGAGGAATA
CAAGCTTGTTTCAGACACCCTCTATCTCACCATTTCGTATATTGATAGGT
TCCTTTCTTTGAATGTTCTCAATCGCCAGAAGCTTCAGCTGCTTGGGGTT
TCTTCAATGCTCATTGCCTCAAAGTATGAGGAAATTAGCCCTCCAAATGT
GGAAGATTTTTGCTACATTACGGATAATACCTACACCAAAGACGAGGTGG
TGAAAATGGAGGCCGATATACTCAAGTCCTTGAAGTTTGAATTGGGAAGT
CCCACTGTCAAGACATTTTTGAGGCGATTAACCAGGGTTGCACAAGAGGA
T
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