EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_NEIMF (Formate--tetrahydrofolate ligase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=fhs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.095e-16
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG G  DL   V  A EN      F Y +++SIK+KI  IA+  YGA  V++S EA  +I      G   +PICMA TQYS S +A   G P GF + +R +
Sbjct:  414 GGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRITVRGI 515          

HSP 2 Score: 30.8018 bits (68), Expect = 2.095e-16
Identity = 15/24 (62.50%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGFI  L G M  MPGLP  P
Sbjct:  518 SSGAGFIVALCGNMMKMPGLPKVP 541          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_DESAH (Formate--tetrahydrofolate ligase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=fhs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.719e-16
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQI-EMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG GA++    V  ACE  T+  KFLY LD+ +KE+I+ IA+  YGA GV+YS EA   +  +      + L +CM  T  S S + + KG PTG+ L IR+V
Sbjct:  446 GGDGAIEFAETVIEACEEETE-FKFLYELDMPLKERIELIAKEVYGADGVDYSNEANASLARIQADPELAKLGMCMVKTHLSLSDNPSLKGVPTGWRLMIREV 547          

HSP 2 Score: 31.9574 bits (71), Expect = 2.719e-16
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI P+ GT+S MPG    P   R
Sbjct:  552 GAGFIVPVAGTISLMPGTGSNPAFKR 577          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_VIBVY (Formate--tetrahydrofolate ligase OS=Vibrio vulnificus (strain YJ016) GN=fhs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.535e-16
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GGKG   +   V  AC+    P  F  LY  + +++EKI T+  + YG   V++S+ A++Q+ +Y   GF  L +CMA T  S S D++ KGAP+GF + +R+V+
Sbjct:  439 GGKGMEAVAREVIEACD---APANFRPLYRAEQTLEEKIITVCTKGYGCGEVQFSDTAKQQLALYQTLGFGELAVCMAKTPLSISSDSSLKGAPSGFTIMVREVR 540          

HSP 2 Score: 35.4242 bits (80), Expect = 3.535e-16
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            R   GAGF+Y L G + TMPGLP  P  +
Sbjct:  540 RLCAGAGFVYALTGNVMTMPGLPDIPAFM 568          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_VIBVU (Formate--tetrahydrofolate ligase OS=Vibrio vulnificus GN=fhs PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.535e-16
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GGKG   +   V  AC+    P  F  LY  + +++EKI T+  + YG   V++S+ A++Q+ +Y   GF  L +CMA T  S S D++ KGAP+GF + +R+V+
Sbjct:  439 GGKGMEAVAREVIEACD---APANFRPLYRAEQTLEEKIITVCTKGYGCGEVQFSDTAKQQLALYQTLGFGELAVCMAKTPLSISSDSSLKGAPSGFTIMVREVR 540          

HSP 2 Score: 35.4242 bits (80), Expect = 3.535e-16
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            R   GAGF+Y L G + TMPGLP  P  +
Sbjct:  540 RLCAGAGFVYALTGNVMTMPGLPDIPAFM 568          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHEWM (Formate--tetrahydrofolate ligase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fhs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.537e-16
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   32 MGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            +G  GA  L   V  A E  +   + LY  D SI+ K+ TIA S YGA GV  S+EA+ Q+E     G   L +C+A T  S SHD   KG P GF LPI  +K
Sbjct:  426 LGANGAEALAHKVVEATEQDSD-FRLLYSSDASIEAKLLTIAESGYGARGVVLSDEAKAQLEQIKAMGLDNLAVCIAKTPLSISHDPLLKGVPQGFELPIAQLK 528          

HSP 2 Score: 33.113 bits (74), Expect = 3.537e-16
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            + + GAGFI  LVG + TMPGL ++P
Sbjct:  528 KINAGAGFITALVGKVMTMPGLGVKP 553          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_LISIN (Formate--tetrahydrofolate ligase OS=Listeria innocua GN=fhs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.538e-16
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            GG G ++L   V  A E+  +  K +Y    SI+EK++ I  + YG  GVE S +A+KQI  +   G+   PICMA TQYS S D    G PT F++ IR+
Sbjct:  416 GGDGGLELADKVIAAVESGEEDYKRIYDDAWSIEEKLEAIVTKVYGGIGVELSSKAQKQIVEFKKYGWDRYPICMAKTQYSLSDDPTLLGRPTDFVIHIRE 516          

HSP 2 Score: 34.2686 bits (77), Expect = 3.538e-16
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  348 IGAGFIYPLVGTMSTMPGLPIRPCLL 425
            +GAGF+  L G + TMPGLP +P  L
Sbjct:  521 LGAGFVVALTGDVMTMPGLPKKPAAL 546          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_NEIM0 (Formate--tetrahydrofolate ligase OS=Neisseria meningitidis serogroup C (strain 053442) GN=fhs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.538e-16
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG G  DL   V  A E+ T    F Y +++ IK+KI  IA+  YGA  V++S EA  +I      G   +PICMA TQYS S +A   G P GF + +R +
Sbjct:  414 GGAGGADLARKVVNAIESQTNNFGFAYDVELGIKDKIRAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGFRIAVRGI 515          

HSP 2 Score: 31.187 bits (69), Expect = 3.538e-16
Identity = 15/24 (62.50%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGFI  L G M  MPGLP  P
Sbjct:  518 SAGAGFIVALCGNMMKMPGLPKVP 541          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_PEDPA (Formate--tetrahydrofolate ligase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=fhs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.539e-16
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG G+ DL   V    +    P+  LY  +  I++KI TI +  YG S VEYS +A K+I+     G+  LPICMA +QYSFS D  + GAP+ F++ + D+
Sbjct:  409 GGAGSKDLANEVIALADTNQGPMTKLYDNNGRIEDKIKTIVQKIYGGSDVEYSPQALKKIKECVANGWDHLPICMAKSQYSFSDDPKQLGAPSDFVMHVNDI 510          

HSP 2 Score: 30.0314 bits (66), Expect = 3.539e-16
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  348 IGAGFIYPLVGTMSTMPGLPIRPCLL 425
            +GAGF+    G + TMPGLP  P  L
Sbjct:  514 LGAGFLVVQTGKVLTMPGLPKHPAAL 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_ACICJ (Formate--tetrahydrofolate ligase OS=Acidiphilium cryptum (strain JF-5) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            G  GA DL  AV       +     LYP D+ +  K+ TIA R YGA  +E S  A K++  +  QG+  LP+C+A TQYSF+ D A +GAPTGF +PIRD +
Sbjct:  413 GSAGATDLAQAVIETIAAKSARFAPLYPDDMKLPHKLRTIAQRIYGADDIELSPLAAKRLARFEAQGYDHLPVCVAKTQYSFTADPARRGAPTGFTVPIRDAR 515          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_DEHSC (Formate--tetrahydrofolate ligase OS=Dehalococcoides sp. (strain CBDB1) GN=fhs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.592e-16
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSG-LPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG GA +L  AV  AC N      FLYP ++ +K++I+TIAR  YGA+GV Y+  A +++      G +  +P CM  T  S SHD A KG P+GF LPIRD+
Sbjct:  452 GGDGATELAEAVTDAC-NEPNNFHFLYPENMPLKKRIETIARKVYGANGVSYTPIAMEKLARIESMGDTQFMPTCMVKTHLSLSHDPALKGRPSGFTLPIRDI 553          

HSP 2 Score: 24.2534 bits (51), Expect = 4.592e-16
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 3
Query:  348 IGAGFIYPLVGTMSTMPGLPIRP 416
            +GAG + P+ G +  MPG    P
Sbjct:  557 MGAGLVVPVAGDIKLMPGTSSDP 579          
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_NEIMF2.095e-1642.16Formate--tetrahydrofolate ligase OS=Neisseria meni... [more]
FTHS_DESAH2.719e-1642.72Formate--tetrahydrofolate ligase OS=Desulfobacteri... [more]
FTHS_VIBVY3.535e-1638.10Formate--tetrahydrofolate ligase OS=Vibrio vulnifi... [more]
FTHS_VIBVU3.535e-1638.10Formate--tetrahydrofolate ligase OS=Vibrio vulnifi... [more]
FTHS_SHEWM3.537e-1643.27Formate--tetrahydrofolate ligase OS=Shewanella woo... [more]
FTHS_LISIN3.538e-1641.58Formate--tetrahydrofolate ligase OS=Listeria innoc... [more]
FTHS_NEIM03.538e-1641.18Formate--tetrahydrofolate ligase OS=Neisseria meni... [more]
FTHS_PEDPA3.539e-1641.18Formate--tetrahydrofolate ligase OS=Pediococcus pe... [more]
FTHS_ACICJ4.316e-1644.66Formate--tetrahydrofolate ligase OS=Acidiphilium c... [more]
FTHS_DEHSC4.592e-1645.63Formate--tetrahydrofolate ligase OS=Dehalococcoide... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
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