EY679003 | Citrus Genome Database

Overview


Name	EY679003
Unique Name	EY679003
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	876

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HALMA (Formate--tetrahydrofolate ligase OS=Haloarcula marismortui GN=fhs PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.460e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQP-LKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G +G VDL   V  A E   +   + LY  D SIKEKI T+A   YGA  V+Y+  A   IE      F   P+ M+ T +S S DA++KGAP G+ L I +V
Sbjct:  408 GSEGGVDLAENVIEATEESNEEDFRMLYDDDDSIKEKIHTVATEIYGADDVKYTGGALDDIEQMNDLDFDDYPVVMSKTFHSLSDDASQKGAPEGWELEISEV 510

HSP 2 Score: 31.5722 bits (70), Expect = 1.460e-13
Identity = 14/24 (58.33%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGF+  L     TMPGLP RP
Sbjct:  513 SAGAGFLVALTADALTMPGLPARP 536

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_ROSDO (Formate--tetrahydrofolate ligase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=fhs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 2

Query:   32 MGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            +G +G+ DL   V    E  +     +YP D+ + EK+ TIA R Y A      ++   Q++++  QG+  LP+CMA TQYSFS D   +GAPTG  +P+R+V+
Sbjct:  413 LGSEGSADLARKVVEVAEKDSANFAPIYPDDMPLAEKVQTIAKRIYRADEALMDKKVRDQLKLWEEQGYGHLPVCMAKTQYSFSTDPNLRGAPTGHSVPVREVR 516

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_THET2 (Formate--tetrahydrofolate ligase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fhs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.898e-13
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 2

Query:   17 FSPSPM---GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            F+PS +   GG+G ++L   V  A + +    + LYPL+ S++ K++ IA R YGA GVE+SEEA++ ++    +G   LP+ +A    S S +   +G P GF + + D++
Sbjct:  390 FAPSEVYAQGGEGGLELAERVLEALD-LPHAYRPLYPLEASLEAKVEAIATRVYGAEGVEWSEEAKRALKAAKKEGCEALPVVVAKAATSLSDNPRLRGRPRGFTVRVTDLR 500

HSP 2 Score: 30.4166 bits (67), Expect = 1.898e-13
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R  +GAGF+   +G + T+PGLP  P
Sbjct:  500 RCRLGAGFVVVYMGGIETLPGLPKTP 525

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HAEDU (Formate--tetrahydrofolate ligase OS=Haemophilus ducreyi GN=fhs PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.463e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 2

Query:   44 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G VDL   V +A +      +F Y ++  I+ KI  IA+  YGA+ V +S EA  +I+         LPICMA TQYS S  A   G PTGF + +R +
Sbjct:  415 GGVDLAHKVLKAIDEQQNNFQFAYDVNDRIQHKITAIAQKIYGATDVNFSAEALAEIKNLEKLALDKLPICMAKTQYSLSDSAKLLGCPTGFNITVRSI 513

HSP 2 Score: 30.8018 bits (68), Expect = 2.463e-13
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  345 SIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            S GAGFI  + G++  MPGLP  P   R
Sbjct:  516 SAGAGFIVAICGSIMRMPGLPKNPATNR 543

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STRS7 (Formate--tetrahydrofolate ligase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=fhs PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.463e-13
Identity = 37/102 (36.27%), Postives = 55/102 (53.92%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  G + L  AV  A    +   K LY    S++EK+  I    YG   V++  +A+ Q++ +   G+  LP+CMA TQYSFS D +  GAP  F + IR++
Sbjct:  412 GADGGIALANAVVSAIAEESAAYKRLYADKDSLEEKLRAIVTEIYGGRAVQFGPKAKNQLKQFAQFGWDQLPVCMAKTQYSFSDDPSLLGAPDQFDITIREL 513

HSP 2 Score: 32.7278 bits (73), Expect = 2.463e-13
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  L G + TMPGLP  P  ++
Sbjct:  518 GAGFIVALTGDVMTMPGLPKTPAAMK 543

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_JANSC (Formate--tetrahydrofolate ligase OS=Jannaschia sp. (strain CCS1) GN=fhs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 2

Query:   32 MGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            +G +G+  L   V    E      + LYP D+ + EKI  + +  Y A      ++   Q++++  QG+  LP+CMA TQYSF+ D  E+GAPTGF +P+R+V+
Sbjct:  413 LGSEGSAPLAEKVVEVIEKGEANFQTLYPDDMPLAEKIQAVCKGIYRADEAVMDKKILDQLKLWEDQGYGKLPVCMAKTQYSFTTDPNERGAPTGFTIPVREVR 516

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS1_STRPG (Formate--tetrahydrofolate ligase 1 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.199e-13
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEK-IDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            G +G + L   V R  +      K LY  + +++EK I+ + + YG   V++  +A+ Q++ +   G+  LP+CMA TQYSFS + +  GAPT F + IR+
Sbjct:  412 GAEGGLALAKTVVRVIDQEAADYKRLYSDEDTLEEKVINIVTQIYGGKAVQFGPKAKTQLKQFAEFGWDKLPVCMAKTQYSFSDNPSLLGAPTDFDITIRE 512

HSP 2 Score: 30.8018 bits (68), Expect = 3.199e-13
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFI  L G + TMPGLP  P  +
Sbjct:  518 GAGFIVGLTGDVMTMPGLPKVPAAM 542

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS1_STRPD (Formate--tetrahydrofolate ligase 1 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.199e-13
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEK-IDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            G +G + L   V R  +      K LY  + +++EK I+ + + YG   V++  +A+ Q++ +   G+  LP+CMA TQYSFS + +  GAPT F + IR+
Sbjct:  412 GAEGGLALAKTVVRVIDQEAADYKRLYSDEDTLEEKVINIVTQIYGGKAVQFGPKAKTQLKQFAEFGWDKLPVCMAKTQYSFSDNPSLLGAPTDFDITIRE 512

HSP 2 Score: 30.8018 bits (68), Expect = 3.199e-13
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFI  L G + TMPGLP  P  +
Sbjct:  518 GAGFIVGLTGDVMTMPGLPKVPAAM 542

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS1_STRPC (Formate--tetrahydrofolate ligase 1 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.199e-13
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEK-IDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            G +G + L   V R  +      K LY  + +++EK I+ + + YG   V++  +A+ Q++ +   G+  LP+CMA TQYSFS + +  GAPT F + IR+
Sbjct:  412 GAEGGLALAKTVVRVIDQEAADYKRLYSDEDTLEEKVINIVTQIYGGKAVQFGPKAKTQLKQFAEFGWDKLPVCMAKTQYSFSDNPSLLGAPTDFDITIRE 512

HSP 2 Score: 30.8018 bits (68), Expect = 3.199e-13
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFI  L G + TMPGLP  P  +
Sbjct:  518 GAGFIVGLTGDVMTMPGLPKVPAAM 542

[Close]

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS1_STRPB (Formate--tetrahydrofolate ligase 1 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.199e-13
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEK-IDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            G +G + L   V R  +      K LY  + +++EK I+ + + YG   V++  +A+ Q++ +   G+  LP+CMA TQYSFS + +  GAPT F + IR+
Sbjct:  412 GAEGGLALAKTVVRVIDQEAADYKRLYSDEDTLEEKVINIVTQIYGGKAVQFGPKAKTQLKQFAEFGWDKLPVCMAKTQYSFSDNPSLLGAPTDFDITIRE 512

HSP 2 Score: 30.8018 bits (68), Expect = 3.199e-13
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFI  L G + TMPGLP  P  +
Sbjct:  518 GAGFIVGLTGDVMTMPGLPKVPAAM 542

The following BLAST results are available for this feature:

BLAST of EY679003 vs. ExPASy Swiss-Prot

BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293


Match Name	E-value	Identity	Description
FTHS_HALMA	1.460e-13	41.75	Formate--tetrahydrofolate ligase OS=Haloarcula mar...	[more]
FTHS_ROSDO	1.535e-13	38.46	Formate--tetrahydrofolate ligase OS=Roseobacter de...	[more]
FTHS_THET2	1.898e-13	34.82	Formate--tetrahydrofolate ligase OS=Thermus thermo...	[more]
FTHS_HAEDU	2.463e-13	39.39	Formate--tetrahydrofolate ligase OS=Haemophilus du...	[more]
FTHS_STRS7	2.463e-13	36.27	Formate--tetrahydrofolate ligase OS=Streptococcus ...	[more]
FTHS_JANSC	2.618e-13	36.54	Formate--tetrahydrofolate ligase OS=Jannaschia sp....	[more]
FTHS1_STRPG	3.199e-13	34.65	Formate--tetrahydrofolate ligase 1 OS=Streptococcu...	[more]
FTHS1_STRPD	3.199e-13	34.65	Formate--tetrahydrofolate ligase 1 OS=Streptococcu...	[more]
FTHS1_STRPC	3.199e-13	34.65	Formate--tetrahydrofolate ligase 1 OS=Streptococcu...	[more]
FTHS1_STRPB	3.199e-13	34.65	Formate--tetrahydrofolate ligase 1 OS=Streptococcu...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA