EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_BACV8 (Formate--tetrahydrofolate ligase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=fhs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 39/103 (37.86%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   35 GGKGAVDLG-IAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+GAV+L  + V+   E  ++PL++ Y  + S++ KI  +A + YGAS + YS  A K+++     G+   PIC+A TQYSFS D    GA   F   ++D+
Sbjct:  411 GGEGAVELAELVVKTIEEQPSEPLQYAYDDEDSVETKISKVACNLYGASIITYSAAARKKLKHIVELGYGNFPICIAKTQYSFSTDPKIYGAVDNFEFHVQDI 513          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_DESDA (Formate--tetrahydrofolate ligase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=fhs PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.967e-11
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQI-EMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+GA++L  AV  AC N     + LY  +  + E+I TIA+  YGA GVE+   A +++ ++        L +CM  TQYS S   A KG P G+ L +RDV
Sbjct:  446 GGEGALELADAVTDAC-NEKNEFRPLYNWNSPLTERITTIAQEVYGADGVEFEPLAAQRLKDLQERPDADELGVCMVKTQYSLSDKPALKGVPKGWRLHVRDV 547          

HSP 2 Score: 25.409 bits (54), Expect = 9.967e-11
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRP 416
            GAG + P+ G +S MPG   +P
Sbjct:  552 GAGLVAPVSGDISLMPGTGSKP 573          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_THEAC (Formate--tetrahydrofolate ligase OS=Thermoplasma acidophilum GN=fhs PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 9.996e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLP-ICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+G +DL   V  +  +    +K  Y L   I+ KI+ IAR+ YGA GV + ++A    +M   +     P +CMA TQYSFS DA+    P GF + ++ +
Sbjct:  395 GGEGGIDLANKVLASLGS--HEIKRTYDLKDDIRTKIEKIARNVYGADGVIFEKKALS--DMKKAEEIMENPYVCMAKTQYSFSDDASLLNDPHGFTIKVQSI 493          

HSP 2 Score: 35.039 bits (79), Expect = 9.996e-11
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGF+ P++G + TMPGLP  P
Sbjct:  496 SSGAGFVVPILGEIMTMPGLPKHP 519          
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_BACV89.313e-1137.86Formate--tetrahydrofolate ligase OS=Bacteroides vu... [more]
FTHS_DESDA9.967e-1139.81Formate--tetrahydrofolate ligase OS=Desulfovibrio ... [more]
FTHS_THEAC9.996e-1135.92Formate--tetrahydrofolate ligase OS=Thermoplasma a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
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