EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_BACCR (Formate--tetrahydrofolate ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fhs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.288e-23
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G VDL   V +  E        LY L++ ++EKI TIA+  YGA  +E++ +A KQ+  Y G+G+S LP+CMA TQYS S D  + G P+ FI+ IR++K
Sbjct:  418 GGQGGVDLAEKVLKEIEKGENNYAPLYELELPLEEKIRTIAQKVYGAKDIEFAPKARKQLAQYEGEGWSNLPVCMAKTQYSLSDDVTKLGRPSDFIVTIRELK 520          

HSP 2 Score: 40.817 bits (94), Expect = 2.288e-23
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            + SIGAGFI  L GTM TMPGLP +P  L+
Sbjct:  520 KPSIGAGFIVALTGTMLTMPGLPKQPAALQ 549          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: C1TC_YEAST (C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae GN=ADE3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.458e-23
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GGKGA+DL  AV  A  N      FLY ++ S+++K+ TI +  YG + ++   EA+++I+MY  QGF  LPIC+A TQYS SHDA  KG PTGF  PIRDV+
Sbjct:  803 GGKGAIDLAKAVIEA-SNQPVDFHFLYDVNSSVEDKLTTIVQKMYGGAAIDILPEAQRKIDMYKEQGFGNLPICIAKTQYSLSHDATLKGVPTGFTFPIRDVR 904          

HSP 2 Score: 27.335 bits (59), Expect = 8.458e-23
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGL 404
            R S GAG++Y L   + T+PGL
Sbjct:  904 RLSNGAGYLYALAAEIQTIPGL 925          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAHJ (Formate--tetrahydrofolate ligase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=fhs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.536e-23
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQP--LKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG V+L     +  E + QP   KFLY LD S++EKI+TI +  YG S V +S++A+KQ++ +T  G+   PICMA TQYSFS DA   GAPT F + IR++++
Sbjct:  412 GGKGGVELA---NQVLEVIEQPNDFKFLYDLDQSLEEKIETIVKDIYGGSSVTFSKKAKKQLKEFTDNGWGQYPICMAKTQYSFSDDATALGAPTDFDITIRELEA 514          

HSP 2 Score: 35.4242 bits (80), Expect = 8.536e-23
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3
Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: C1TM_YEAST (C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=MIS1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.100e-22
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKGAV+L  AV  A +   +   FLY ++ SI++K+ +I +  YG + +E S EA+K+I+ Y  QGF  LPIC+A TQYS SHD + KG P GF  PIRDV++
Sbjct:  832 GGKGAVELAHAVVDATKE-PKNFNFLYDVNSSIEDKLTSIVQKMYGGAKIEVSPEAQKKIDTYKKQGFGNLPICIAKTQYSLSHDPSLKGVPRGFTFPIRDVRA 934          

HSP 2 Score: 31.9574 bits (71), Expect = 1.100e-22
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGL 404
            RASIGAG++Y L   + T+PGL
Sbjct:  933 RASIGAGYLYALAAEIQTIPGL 954          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HERA2 (Formate--tetrahydrofolate ligase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.110e-22
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GG G  +L   V  A +   Q  +FLY L+  +  KI TIA + YGA+ V YSE A +Q+      GF  LPICMA T  S SHD A KGAPTG+  PIR+V++
Sbjct:  427 GGVGGEELAEKVLAAIDQAGQA-QFLYELEQPLTAKIATIATKIYGAAEVSYSEAASEQLAKLEANGFGNLPICMAKTHLSISHDPALKGAPTGYSFPIREVRA 529          

HSP 2 Score: 43.1282 bits (100), Expect = 1.110e-22
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            RASIGAGFIYP+ G M TMPGL   P
Sbjct:  528 RASIGAGFIYPIAGDMMTMPGLSANP 553          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CHLAD (Formate--tetrahydrofolate ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=fhs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.137e-22
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENV-TQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G V+L   V R  E    +  K+LYPL++ + EKI+ IAR  YGA+G+E S  A  Q+   T  GF  LPICM  T  S SHD   +GAP GFI PIR+V+
Sbjct:  427 GGAGGVELAKLVARVTERPGPREPKYLYPLEMPLAEKIEVIARRIYGAAGIELSATAAAQLATLTEAGFGNLPICMVKTHLSLSHDPKLRGAPAGFIFPIREVR 530          

HSP 2 Score: 35.4242 bits (80), Expect = 4.137e-22
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI P+ GT  TMPGL   P
Sbjct:  530 RISAGAGFILPIAGTTVTMPGLGAHP 555          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CARHZ (Formate--tetrahydrofolate ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fhs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.386e-22
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GG+G ++L   V +  E      ++LY L++ IK+KI+TIAR  YGA GV ++ +AEK +  +   GF  +P+ MA TQYS S D  + G PTGF + +R++++
Sbjct:  412 GGEGGIELAQKVLKVIEEKPANFRYLYDLEMPIKQKIETIAREIYGADGVVFTADAEKTLAKFEEMGFGNMPVIMAKTQYSLSDDPNKLGRPTGFNITVRELRA 515          

HSP 2 Score: 39.2762 bits (90), Expect = 5.386e-22
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            RAS+GAGFI  + G + TMPGLP RP
Sbjct:  514 RASVGAGFIVAITGDIMTMPGLPKRP 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_MOOTA (Formate--tetrahydrofolate ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.186e-21
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G ++L   V +  E+       LY LD+SIK+KI  IA   YGA GV Y+ EA+K I+ Y   G+  LP+ MA TQYSFS D  + G P  F + +R+V+
Sbjct:  415 GGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVR 517          

HSP 2 Score: 39.2762 bits (90), Expect = 1.186e-21
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI P+ G + TMPGLP RP
Sbjct:  517 RLSAGAGFIVPITGAIMTMPGLPKRP 542          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CHLSY (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.394e-21
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENV-TQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            G  G VDL   V    E    +P++FLYPL+ S+ +KI TIA R YGA+ V +S  A  Q+      GF  LPICMA T  S SHD A +GAP GF  PIR+V+
Sbjct:  427 GSAGGVDLARLVIEIAERPGPRPVQFLYPLEWSLADKITTIAHRIYGAAAVTFSPTAAAQLAALEDAGFGNLPICMAKTHLSLSHDPALRGAPEGFTFPIREVR 530          

HSP 2 Score: 35.4242 bits (80), Expect = 3.394e-21
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI P+ GT  TMPGL   P
Sbjct:  530 RLSAGAGFILPIAGTTVTMPGLGAHP 555          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CHLAA (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.394e-21
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENV-TQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            G  G VDL   V    E    +P++FLYPL+ S+ +KI TIA R YGA+ V +S  A  Q+      GF  LPICMA T  S SHD A +GAP GF  PIR+V+
Sbjct:  427 GSAGGVDLARLVIEIAERPGPRPVQFLYPLEWSLADKITTIAHRIYGAAAVTFSPTAAAQLAALEDAGFGNLPICMAKTHLSLSHDPALRGAPEGFTFPIREVR 530          

HSP 2 Score: 35.4242 bits (80), Expect = 3.394e-21
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI P+ GT  TMPGL   P
Sbjct:  530 RLSAGAGFILPIAGTTVTMPGLGAHP 555          
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_BACCR2.288e-2344.66Formate--tetrahydrofolate ligase OS=Bacillus cereu... [more]
C1TC_YEAST8.458e-2350.49C-1-tetrahydrofolate synthase, cytoplasmic OS=Sacc... [more]
FTHS_STAHJ8.536e-2348.11Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
C1TM_YEAST1.100e-2249.04C-1-tetrahydrofolate synthase, mitochondrial OS=Sa... [more]
FTHS_HERA21.110e-2247.12Formate--tetrahydrofolate ligase OS=Herpetosiphon ... [more]
FTHS_CHLAD4.137e-2248.08Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_CARHZ5.386e-2240.38Formate--tetrahydrofolate ligase OS=Carboxydotherm... [more]
FTHS_MOOTA1.186e-2143.69Formate--tetrahydrofolate ligase OS=Moorella therm... [more]
FTHS_CHLSY3.394e-2148.08Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_CHLAA3.394e-2148.08Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
back to top