EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHESW (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain W3-18-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.743e-21
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIR 331
            G  GA++L   V RA +  +Q  + LYP D S++ K+ T+A   YGA+G+  S+EA++Q+  +T  G++ LP+CMA T  S SHD  +KG P  FI+PIR
Sbjct:  427 GEAGAIELAYTVVRAADTQSQ-FRLLYPDDASLEAKLSTLAEVGYGAAGISLSDEAKQQVREFTSLGYAYLPVCMAKTPLSISHDPMQKGVPKDFIVPIR 525          

HSP 2 Score: 33.8834 bits (76), Expect = 5.743e-21
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGF+  LVG + TMPGL I+P  L+
Sbjct:  532 GAGFVTALVGNVMTMPGLGIKPGYLK 557          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SACEN (Formate--tetrahydrofolate ligase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=fhs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.744e-21
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKGA++L   V  A E   +  + LYP    ++ KI+TIA R YGA GV Y   A + +  Y   GF  LP+C+A T  S S D +  GAPTG+ LP+R+V++
Sbjct:  422 GGKGALELAEVVVEAAEEPNR-FRLLYPDSADLRTKIETIATRVYGADGVSYQPAAARALADYEAIGFGSLPVCIAKTHLSLSSDPSLLGAPTGWTLPVREVRA 524          

HSP 2 Score: 39.2762 bits (90), Expect = 5.744e-21
Identity = 19/30 (63.33%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            RASIGAGFIY + G M TMPGL   P   R
Sbjct:  523 RASIGAGFIYAICGEMRTMPGLGSHPAAER 552          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHEPC (Formate--tetrahydrofolate ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.470e-21
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIR 331
            G  GA++L   V RA +  +Q  + LYP D S++ K+ T+A   YGA+G+  S+EA++Q+  +T  G++ LP+CMA T  S SHD  +KG P  FI+PIR
Sbjct:  427 GEAGAIELAHTVVRAADTQSQ-FRLLYPDDASLEAKLSTLAEVGYGAAGISLSDEAKQQVREFTSLGYAHLPVCMAKTPLSISHDPIQKGVPKDFIVPIR 525          

HSP 2 Score: 33.8834 bits (76), Expect = 7.470e-21
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGF+  LVG + TMPGL I+P  L+
Sbjct:  532 GAGFVTALVGNVMTMPGLGIKPGYLK 557          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HALOH (Formate--tetrahydrofolate ligase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=fhs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.265e-20
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+G +DL   +    EN      +LY ++  I +KI+ IA+  YGA GV Y+ +A KQI+ YT  G+  LPICMA TQ S S D + KG P GF + +R+V
Sbjct:  410 GGEGGLDLARKLVDVLENTPGQFSYLYDVNFPITDKIEKIAKEIYGADGVNYTSKALKQIDKYTELGYDKLPICMAKTQSSISDDPSLKGRPRGFRINVREV 511          

HSP 2 Score: 36.5798 bits (83), Expect = 1.265e-20
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGFI PL G + TMPGLP +P
Sbjct:  514 SAGAGFIIPLTGPVLTMPGLPKKP 537          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_LACPL (Formate--tetrahydrofolate ligase OS=Lactobacillus plantarum GN=fhs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.645e-20
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKI-DTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRD 334
            GG GA DL  AV   C    QP  F  L P D  +K KI D + ++YG + VEYS +A++Q+  +  QG+  LP+CMA TQYS S D    GAPTGF + +R+
Sbjct:  408 GGDGATDLAAAVVDLC---AQPSHFQPLSPADADLKTKINDIVTKTYGGANVEYSAKAQRQLRTFAKQGWDHLPVCMAKTQYSLSDDPKRLGAPTGFTINVRE 507          

HSP 2 Score: 33.8834 bits (76), Expect = 1.645e-20
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  348 IGAGFIYPLVGTMSTMPGLPIRPCLL 425
            +GAGFI  L G + TMPGLP  P  L
Sbjct:  512 LGAGFIVALTGNVLTMPGLPKHPAAL 537          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS1_DESHY (Formate--tetrahydrofolate ligase 1 OS=Desulfitobacterium hafniense (strain Y51) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.707e-20
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G ++L  AV    +N       LY LD+ I +KI+TI +  YGA GV +++EA   ++ Y   G+  LPICMA TQYS + D    G P+GF + +R+++
Sbjct:  412 GGEGGIELAKAVLNIVDNKESNFHVLYELDLPIAKKIETICKEVYGADGVNFTKEALTSMKKYEELGYGQLPICMAKTQYSLTDDQNVLGRPSGFTITVRELR 514          

HSP 2 Score: 38.5058 bits (88), Expect = 4.707e-20
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            R S GAGF+  + G + TMPGLP RP  LR
Sbjct:  514 RLSAGAGFLVAITGAIMTMPGLPKRPAALR 543          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_ARTS2 (Formate--tetrahydrofolate ligase OS=Arthrobacter sp. (strain FB24) GN=fhs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.120e-20
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG G  +L   V  A E      + LYPL++S+++KI TI +  YGA GV++S  A K++      G++G+P+CMA TQYSFS DA   GAP GF + +RD+
Sbjct:  422 GGDGGDELAAKVLAALE-APHSFRHLYPLELSVEDKIRTIVQEMYGADGVDFSVPALKRLAEIEKNGWAGMPVCMAKTQYSFSDDATRLGAPKGFTVHVRDL 522          

HSP 2 Score: 34.2686 bits (77), Expect = 6.120e-20
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  L G + TMPGLP  P  LR
Sbjct:  527 GAGFIVALTGAVMTMPGLPKVPAALR 552          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_EUBR3 (Formate--tetrahydrofolate ligase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.122e-20
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+G +DL   V    E+     K LY   +S+KEKI+T+A+  YGA GV YS  AE++++  T  G    P+CMA TQYS S DA + G P+GF + +R+V
Sbjct:  412 GGEGGIDLANKVLETIEHKESNFKVLYDDSLSLKEKIETVAKEIYGADGVTYSPAAERELKRITDLGMGDFPVCMAKTQYSLSDDAKKLGRPSGFKINVREV 513          

HSP 2 Score: 30.4166 bits (67), Expect = 6.122e-20
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRP 416
            AS GAGF+  + G++ TMPGL  +P
Sbjct:  515 ASAGAGFVVAVNGSIMTMPGLSKKP 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_EUBAC (Formate--tetrahydrofolate ligase OS=Eubacterium acidaminophilum GN=fhs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.122e-20
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G V+L   V    E      K LYP ++ +K+KI+TIA+  Y A GVE+S +A K+++ +   GF  LPIC+A TQYSFS +   KGAP GF + + + +
Sbjct:  412 GGEGGVELAKKVVEVTEKGAAKFKPLYPAEMPLKQKIETIAKEIYRADGVEFSAKASKELDKFEKLGFGNLPICVAKTQYSFSDNPNLKGAPKGFTVSVSNAR 514          

HSP 2 Score: 33.113 bits (74), Expect = 6.122e-20
Identity = 16/26 (61.54%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI  L G + TMPGLP  P
Sbjct:  514 RISAGAGFIVVLTGDIMTMPGLPKVP 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOPH (Formate--tetrahydrofolate ligase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.122e-20
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG+G +DL   V +  E        LYP ++S+KEK+ TIA+  YGA GV +   A K++E  T  GF  LP+CMA  QYS S D ++ G PT F + IR+V
Sbjct:  412 GGEGGIDLANKVIKTIETKESNYHVLYPNEMSLKEKMGTIAKEIYGADGVTFDSGALKEVERLTELGFGNLPVCMAKNQYSLSDDPSKLGRPTNFTVNIREV 513          

HSP 2 Score: 33.113 bits (74), Expect = 6.122e-20
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGF+  + GT+ TMPGLP  P
Sbjct:  516 SAGAGFVVAITGTVMTMPGLPKVP 539          
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_SHESW5.743e-2144.00Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_SACEN5.744e-2143.27Formate--tetrahydrofolate ligase OS=Saccharopolysp... [more]
FTHS_SHEPC7.470e-2144.00Formate--tetrahydrofolate ligase OS=Shewanella put... [more]
FTHS_HALOH1.265e-2044.12Formate--tetrahydrofolate ligase OS=Halothermothri... [more]
FTHS_LACPL1.645e-2045.63Formate--tetrahydrofolate ligase OS=Lactobacillus ... [more]
FTHS1_DESHY4.707e-2039.81Formate--tetrahydrofolate ligase 1 OS=Desulfitobac... [more]
FTHS_ARTS26.120e-2044.12Formate--tetrahydrofolate ligase OS=Arthrobacter s... [more]
FTHS_EUBR36.122e-2044.12Formate--tetrahydrofolate ligase OS=Eubacterium re... [more]
FTHS_EUBAC6.122e-2042.72Formate--tetrahydrofolate ligase OS=Eubacterium ac... [more]
FTHS_CLOPH6.122e-2044.12Formate--tetrahydrofolate ligase OS=Clostridium ph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
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