EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_PROMH (Formate--tetrahydrofolate ligase OS=Proteus mirabilis (strain HI4320) GN=fhs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.962e-20
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            GG G ++L   V    EN     + LYP ++ +K+KI+TIA+  YGA GV Y+  A++ +      GF   PICMA TQYS S D A  G PT F + IR+V
Sbjct:  412 GGAGGIELANQVIDTLENDAPQFQLLYPDNMPLKQKIETIAQEIYGAKGVTYNANAQEMLTKIEDMGFGHFPICMAKTQYSLSDDPALLGRPTDFTINIREV 513          

HSP 2 Score: 36.965 bits (84), Expect = 7.962e-20
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            S GAGF+  L GT++TMPGLP +P  +
Sbjct:  516 SAGAGFVVSLTGTINTMPGLPKKPAAM 542          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB8 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS185) GN=fhs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.345e-19
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RA E  +Q  K LYP +VS++ K+ T+A   YGA+GV  S EA++Q +  T  G+  LP+CMA T  S SHD + KG P  F++P+R++
Sbjct:  442 GEAGAIALAQTVVRAAETESQ-FKLLYPDEVSLEAKLSTLAEVGYGAAGVSLSIEAKQQAQQLTALGYGHLPLCMAKTPLSISHDPSLKGVPKDFVVPVREL 542          

HSP 2 Score: 33.4982 bits (75), Expect = 1.345e-19
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL ++P  L+
Sbjct:  547 GAGFITALVGNVMTMPGLGLKPGYLK 572          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHESM (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain MR-4) GN=fhs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.346e-19
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RACE   QP +F  LYP D++++ K+ T+A   YGA+GV  SE A+ Q++  +  G++ LP+CMA T  S SHD   KG P GFI+P+R++
Sbjct:  427 GEAGALALAQTVMRACE---QPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEAAKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVREL 527          

HSP 2 Score: 31.5722 bits (70), Expect = 1.346e-19
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL + P  L+
Sbjct:  532 GAGFITALVGNVMTMPGLGLVPGYLK 557          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_RENSM (Formate--tetrahydrofolate ligase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=fhs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.346e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   38 GKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G G  DL   V  A +      + LY L++ +KEKI+ IA+  YGA  VE+S  A K+I   +  G+  LP+CMA TQYSFS DA+  GAP+GF+L +RD+
Sbjct:  422 GGGGDDLAAKVLAALD-APSDFRHLYELELPVKEKIELIAQKIYGAERVEFSSSALKRIAEISANGWDSLPVCMAKTQYSFSDDASLLGAPSGFVLHVRDL 521          

HSP 2 Score: 34.6538 bits (78), Expect = 1.346e-19
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  L G + TMPGLP +P  L+
Sbjct:  526 GAGFIVALTGAVMTMPGLPKQPAALK 551          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_MOOTH (Formate--tetrahydrofolate ligase OS=Moorella thermoacetica GN=fhs PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.347e-19
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G ++L   V +  E+       LY LD+SIK+KI  IA   YGA GV Y+ EA+K I+ Y   G+  LP+ MA TQYSFS D  + G P  F + +R+V+
Sbjct:  415 GGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVR 517          

HSP 2 Score: 32.3426 bits (72), Expect = 1.347e-19
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S G   I P+ G + TMPGLP RP
Sbjct:  517 RLSAGGRLIVPITGAIMTMPGLPKRP 542          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB2 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS223) GN=fhs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.750e-19
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RA E  +Q  K LYP + S++ K+ T+A   YGASGV  S EA++Q +  T  G+  LP+CMA T  S SHD + KG P  F++P+R++
Sbjct:  437 GEAGAIALARTVVRAAETESQ-FKLLYPDEASLEAKLSTLAEVGYGASGVSLSIEAKQQAQQLTALGYGHLPLCMAKTPLSISHDPSLKGVPKDFVVPVREL 537          

HSP 2 Score: 33.4982 bits (75), Expect = 1.750e-19
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL ++P  L+
Sbjct:  542 GAGFITALVGNVMTMPGLGLKPGYLK 567          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHESR (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain MR-7) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.750e-19
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RACE   QP +F  LYP D++++ K+ T+A   YGA+GV  SE A+ Q++  +  G++ LP+CMA T  S SHD   KG P GFI+P+R++
Sbjct:  426 GEAGALALAQTVMRACE---QPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEAAKLQLQELSALGYAHLPVCMAKTPLSISHDPQLKGVPQGFIVPVREL 526          

HSP 2 Score: 31.5722 bits (70), Expect = 1.750e-19
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL + P  L+
Sbjct:  531 GAGFITALVGNVMTMPGLGLVPGYLK 556          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HELMI (Formate--tetrahydrofolate ligase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=fhs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.751e-19
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G  +L   V  A E      + LY   + IKEKI  I R  YG   V Y+ EAEK I+ +T  G+  LP+CMA TQYS S D  + G P GF + +R+V+
Sbjct:  412 GGEGGRELAEKVVAAIETKPSRFRVLYDSSLPIKEKIAAIVREVYGGDAVAYTPEAEKHIKTFTDLGYGALPVCMAKTQYSLSDDMTKIGRPEGFTVTVREVR 514          

HSP 2 Score: 35.039 bits (79), Expect = 1.751e-19
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGF+  + G + TMPGLP RP
Sbjct:  514 RLSAGAGFLVVITGAIMTMPGLPKRP 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOCY (Formate--tetrahydrofolate ligase OS=Clostridium cylindrosporum GN=fhs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.278e-19
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G V++   V   CE        LY +++SI EKI+ IA + Y A GV+++ + +KQI      G   +PICMA TQYSFS D    GAPTGF + +R+V+
Sbjct:  412 GGEGGVEMAKKVVEICEKNEANFAPLYDVNLSIPEKIEKIATTIYRADGVDFTSDCKKQIAELEKLGLDKMPICMAKTQYSFSDDPTLLGAPTGFRITVREVR 514          

HSP 2 Score: 35.8094 bits (81), Expect = 2.278e-19
Identity = 17/26 (65.38%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI  L G M TMPGLP  P
Sbjct:  514 RVSAGAGFIVALTGNMMTMPGLPKVP 539          
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHESA (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain ANA-3) GN=fhs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-19
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RACE   QP +F  LYP +++++ K+ T+A   YGA+GV  SE A+ Q++  +  G++ LP+CMA T  S SHD   KG P GFI+P+R++
Sbjct:  427 GEAGALTLAQTVMRACE---QPSEFTLLYPDEMALEAKLSTLAEVGYGATGVSLSEAAKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVREL 527          

HSP 2 Score: 31.5722 bits (70), Expect = 2.960e-19
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL + P  L+
Sbjct:  532 GAGFITALVGNVMTMPGLGLVPGYLK 557          
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_PROMH7.962e-2043.14Formate--tetrahydrofolate ligase OS=Proteus mirabi... [more]
FTHS_SHEB81.345e-1944.12Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_SHESM1.346e-1945.19Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_RENSM1.346e-1945.54Formate--tetrahydrofolate ligase OS=Renibacterium ... [more]
FTHS_MOOTH1.347e-1943.69Formate--tetrahydrofolate ligase OS=Moorella therm... [more]
FTHS_SHEB21.750e-1944.12Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_SHESR1.750e-1945.19Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_HELMI1.751e-1942.72Formate--tetrahydrofolate ligase OS=Heliobacterium... [more]
FTHS_CLOCY2.278e-1942.72Formate--tetrahydrofolate ligase OS=Clostridium cy... [more]
FTHS_SHESA2.960e-1944.23Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
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