EY679003 | Citrus Genome Database

Overview


Name	EY679003
Unique Name	EY679003
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	876

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAAM (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fhs PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAAE (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain Newman) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAAC (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain COL) GN=fhs PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAAB (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAA9 (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain JH9) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAA8 (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain NCTC 8325) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAA3 (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain USA300) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAA2 (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain JH1) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_STAA1 (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.009e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKF--LYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GGKG VDL   V    E + QP  F  LY L++ +++KI+ I    YG S V +S +A+KQ++ +   G+   P+CMA TQYSFS D    GAP+GF + IR++++
Sbjct:  412 GGKGGVDLANEV---LEVIDQPNSFKPLYELELPLEQKIEKIVTEIYGGSKVTFSSKAQKQLKQFKENGWDNYPVCMAKTQYSFSDDQTLLGAPSGFEITIRELEA 514

HSP 2 Score: 35.4242 bits (80), Expect = 5.009e-19
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 3

Query:  342 ASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            A  GAGFI  L G + TMPGLP +P  L
Sbjct:  514 AKTGAGFIVALTGAIMTMPGLPKKPAAL 541

BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_PROAC (Formate--tetrahydrofolate ligase OS=Propionibacterium acnes GN=fhs PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.511e-19
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 2

Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVKS 343
            GG GAVDL  AV  AC++     ++ Y L+ S+ EK+  +A + YGA G++ +  A K++  +   G+   P+ +A T  S SHD + KGAPTG+ LP+R+V++
Sbjct:  420 GGDGAVDLAHAVVAACDHKAD-FRYTYDLEDSLVEKLTKVATKVYGADGIDIAPAAAKELAHFEDLGYGTFPVVIAKTHLSLSHDPSLKGAPTGWRLPVREVRA 522

HSP 2 Score: 36.1946 bits (82), Expect = 6.511e-19
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            RA++GAG+IY + G M TMPGL   P   R
Sbjct:  521 RAAVGAGYIYAICGDMRTMPGLGRHPAAER 550

The following BLAST results are available for this feature:

BLAST of EY679003 vs. ExPASy Swiss-Prot

BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293


Match Name	E-value	Identity	Description
FTHS_STAAM	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAAE	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAAC	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAAB	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAA9	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAA8	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAA3	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAA2	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_STAA1	5.009e-19	42.45	Formate--tetrahydrofolate ligase OS=Staphylococcus...	[more]
FTHS_PROAC	6.511e-19	39.42	Formate--tetrahydrofolate ligase OS=Propionibacter...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA