EY679003

Overview
NameEY679003
Unique NameEY679003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB9 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS195) GN=fhs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.461e-19
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDV 337
            G  GA+ L   V RA E  +Q  K LYP + S++ K+ T+A   YGA+GV  S EA++Q +  T  G+  LP+CMA T  S SHD + KG P  F++P+R++
Sbjct:  442 GEAGAIALAQTVVRAAEIESQ-FKLLYPDEASLEAKLSTLAEVGYGAAGVSLSIEAKQQAQQLTALGYGHLPLCMAKTPLSISHDPSLKGVPKDFVVPVREL 542

HSP 2 Score: 33.4982 bits (75), Expect = 8.461e-19
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3 
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  LVG + TMPGL ++P  L+
Sbjct:  547 GAGFITALVGNVMTMPGLGLKPGYLK 572
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_VIBF1 (Formate--tetrahydrofolate ligase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fhs PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.462e-19
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G ++L   V +AC+  TQ    LY  ++S+ +K++ +A + YGA  +E SE+A++Q+  +   G+  L +CMA T  S S D   KGAPT FI+PIR++K
Sbjct:  439 GGNGTLELAEKVIKACQQETQ-FTPLYTSEMSLFDKLNAVAIKGYGAERIELSEKAQQQLATFEKLGYQSLSVCMAKTPASISTDGNIKGAPTDFIVPIRELK 540

HSP 2 Score: 36.5798 bits (83), Expect = 8.462e-19
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 3 
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFIY L G + TMPGLP +P  +
Sbjct:  544 GAGFIYALCGNVMTMPGLPEKPAFM 568
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_MARMM (Formate--tetrahydrofolate ligase OS=Maricaulis maris (strain MCS10) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.470e-19
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG+G   L  AV    E  +     LYP D+ + +KI+T+A+S Y A  V +   A  Q+E +   G+  LP+CMA TQYSFS D A  GAP G  LP+R+V+
Sbjct:  412 GGQGTQKLAEAVSELVEGGSSRFAPLYPDDMPLVDKIETVAQSIYRAGSVVFERSARLQLERWQEAGYGHLPVCMAKTQYSFSADPALTGAPEGHELPVREVR 514

HSP 2 Score: 35.039 bits (79), Expect = 8.470e-19
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 3 
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLL 425
            R S GAGF+  + G + TMPGLP +P  L
Sbjct:  514 RLSAGAGFVVAVCGAIMTMPGLPRKPAAL 542
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_VIBFM (Formate--tetrahydrofolate ligase OS=Vibrio fischeri (strain MJ11) GN=fhs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.100e-18
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G ++L   V +AC+  TQ    LY  ++S+ +K++ +A + YGA  +E SE+A++Q+  +   G+  L +CMA T  S S D   KGAPT F++PIR++K
Sbjct:  439 GGNGTLELAEKVIKACQQETQ-FTPLYTSEMSLFDKLNAVAIKGYGAERIELSEKAQQQLATFEKLGYQSLSVCMAKTPASISTDGNIKGAPTDFVVPIRELK 540

HSP 2 Score: 36.5798 bits (83), Expect = 1.100e-18
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 3 
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLL 425
            GAGFIY L G + TMPGLP +P  +
Sbjct:  544 GAGFIYALCGNVMTMPGLPEKPAFM 568
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBH (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.101e-18
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G ++L   V    EN       +Y   +SIK+KI+TIA   YGA GV+YS+EAEKQI           P+CMA TQYS S DA   G P GF + +++V+
Sbjct:  413 GGNGGLELADKVLDTIENKESKFNPIYEETLSIKQKIETIAEEIYGAEGVDYSKEAEKQISEIEKLDLDKKPVCMAKTQYSLSDDAKLLGRPCGFRINVKEVR 515

HSP 2 Score: 34.6538 bits (78), Expect = 1.101e-18
Identity = 16/26 (61.54%), Postives = 18/26 (69.23%), Query Frame = 3 
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI  L G + TMPGLP +P
Sbjct:  515 RISNGAGFIVVLTGNVMTMPGLPKKP 540
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOB1 (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.101e-18
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G ++L   V    EN       +Y   +SIK+KI+TIA   YGA GV+YS+EAEKQI           P+CMA TQYS S DA   G P GF + +++V+
Sbjct:  413 GGNGGLELADKVLDTIENKESKFNPIYEETLSIKQKIETIAEEIYGAEGVDYSKEAEKQISEIEKLDLDKKPVCMAKTQYSLSDDAKLLGRPCGFRINVKEVR 515

HSP 2 Score: 34.6538 bits (78), Expect = 1.101e-18
Identity = 16/26 (61.54%), Postives = 18/26 (69.23%), Query Frame = 3 
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI  L G + TMPGLP +P
Sbjct:  515 RISNGAGFIVVLTGNVMTMPGLPKKP 540
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOB6 (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=fhs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-18
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G ++L   V    EN       +Y   ++IK+KI+TIA+  YGA GV+YS+EAEKQI           P+CMA TQYS S DA   G P GF + +++V+
Sbjct:  413 GGNGGLELADKVLDTIENKESKFNPIYEETLNIKQKIETIAQEIYGAEGVDYSKEAEKQISEIEKLDLDKKPVCMAKTQYSLSDDAKLLGRPCGFRINVKEVR 515

HSP 2 Score: 35.039 bits (79), Expect = 1.432e-18
Identity = 16/26 (61.54%), Postives = 18/26 (69.23%), Query Frame = 3 
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRP 416
            R S GAGFI  L G + TMPGLP +P
Sbjct:  515 RISNGAGFIVALTGNVMTMPGLPKKP 540
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_CLOAC (Formate--tetrahydrofolate ligase OS=Clostridium acidi-urici GN=fhs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.432e-18
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GG G V+L   V   CEN     K LY ++ SI EKI  IA+  Y A  V +S+ A+KQI      G   LPICMA TQYSFS D A  GAP GF L IRD++
Sbjct:  412 GGDGGVELAQKVIDVCENKKSDFKVLYDVEESIPEKITKIAKEIYRADKVNFSKAAKKQIAELEKLGLDKLPICMAKTQYSFSDDPALLGAPEGFELTIRDLE 514

HSP 2 Score: 28.8758 bits (63), Expect = 1.432e-18
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 3 
Query:  351 GAGFIYPLVGTMSTMPGLPIRPCLLR 428
            GAGFI  L G +  MPGLP  P   R
Sbjct:  518 GAGFIVALTGDIMRMPGLPKVPAANR 543
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_PARDP (Formate--tetrahydrofolate ligase OS=Paracoccus denitrificans (strain Pd 1222) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.432e-18
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA-RSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIRDVK 340
            GGKGA DL  AV    E        LYP ++ + EKI+TI  R YGA  VE+     +++E +   G   LP+CMA TQYSFS + A  GAP GF +P+R+V+
Sbjct:  412 GGKGAEDLARAVVALAEGGAD-FTPLYPDEMPLAEKIETICHRIYGAGQVEFLPHIVERLEEWQAAGHGHLPVCMAKTQYSFSANPAALGAPEGFTIPVREVR 513

HSP 2 Score: 34.6538 bits (78), Expect = 1.432e-18
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = 3 
Query:  339 RASIGAGFIYPLVGTMSTMPGLPIRPCLLR 428
            R + GAGF+  + G + TMPGLP  P  LR
Sbjct:  513 RLAAGAGFVVAICGDIMTMPGLPREPSALR 542
[Close]
BLAST of EY679003 vs. ExPASy Swiss-Prot
Match: FTHS_HALWD (Formate--tetrahydrofolate ligase OS=Haloquadratum walsbyi (strain DSM 16790) GN=fhs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.861e-18
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2 
Query:   35 GGKGAVDLGIAVQRACENVT-QPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMA*TQYSFSHDAAEKGAPTGFILPIR 331
            G +G V+L   V  A E+   +  ++LYP D +IKEKI+T+A   YGA  V YS +AE  IE     GF  +P+C++ T +S + DA +KGAPTG+ L +R
Sbjct:  435 GSEGGVELAERVIGAVESSDPEDFEYLYPADATIKEKIETVATEIYGAGSVNYSTDAEDDIERMRELGFDTVPVCLSKTFHSLTDDARQKGAPTGWTLNVR 535

HSP 2 Score: 32.7278 bits (73), Expect = 1.861e-18
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 3 
Query:  345 SIGAGFIYPLVGTMSTMPGLPIRP 416
            S GAGFI  L G + TMPGLP  P
Sbjct:  540 SAGAGFIVALTGDVLTMPGLPADP 563
The following BLAST results are available for this feature:
BLAST of EY679003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
FTHS_SHEB98.461e-1943.14Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_VIBF18.462e-1940.78Formate--tetrahydrofolate ligase OS=Vibrio fischer... [more]
FTHS_MARMM8.470e-1942.72Formate--tetrahydrofolate ligase OS=Maricaulis mar... [more]
FTHS_VIBFM1.100e-1839.81Formate--tetrahydrofolate ligase OS=Vibrio fischer... [more]
FTHS_CLOBH1.101e-1843.69Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOB11.101e-1843.69Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOB61.432e-1842.72Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOAC1.432e-1849.51Formate--tetrahydrofolate ligase OS=Clostridium ac... [more]
FTHS_PARDP1.432e-1844.66Formate--tetrahydrofolate ligase OS=Paracoccus den... [more]
FTHS_HALWD1.861e-1843.56Formate--tetrahydrofolate ligase OS=Haloquadratum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679003 ID=EY679003; Name=EY679003; organism=Citrus sinensis; type=EST; length=876bp
GCCAGTTTAGTTTTCGTTCTCACCATCGCCCATGGGTGGAAAAGGAGCAG
TGGACCTTGGAATTGCAGTTCAAAGAGCCTGTGAGAATGTTACACAGCCA
TTGAAGTTCTTATATCCTTTAGATGTCAGTATTAAAGAGAAAATAGATAC
AATAGCAAGGTCATATGGTGCTAGCGGCGTTGAGTACTCAGAGGAGGCTG
AGAAACAGATCGAAATGTACACCGGGCAAGGGTTTTCTGGCTTACCAATT
TGCATGGCATAAACCCAGTATTCATTTTCACACGATGCCGCCGAGAAGGG
AGCCCCAACTGGGTTTATCTTACCGATAAGGGATGTAAAGAGCTAGCATT
GGGGCTGGATTCATTTATCCTTTGGTTGGAACAATGAGTACAATGCCAGG
TCTCCCAATAAGGCCATGCCTTTTAAGAGAATGGAGTCAACACTGCAACT
GGAAAGGTTGTTGGGGCTGTCTTAAGATCCCACAAAGCACTCCCGTGTGG
GTCCTCAAGAAGCTCTCCTTTAGATGTTCTTAAATGCTCCTGAGCAAACA
ATGAGCTTGAAGGGCTCCCCCCCCCCCCCACTGGCTGATATTCTAACCCC
GATCTGTAACACTTATGGGTACCTCGGGCTATTTGCTGTGGTAAACAAAA
CCCGACACCAAATAGAACCTGGAAAAAAAAAATCTTGGTACTCACCTTGC
GGACTTTAATTTTCCCTATTAATGTGTCCTTACTCCCATTTGATCTTGAA
TCCCGTTACGAAAATTTACCCTATGGGTGGGGGTGTGATATTTGTAAAAT
AAACAAAAAAAAAAAAAAAATAAAATAAAAGCAAAAGGGCGCGGGCGCGG
GTTAATAAATTATGAAAGGTATCAGA
back to top