CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACCB (Probable manganese transport protein mntH OS=Lactobacillus casei (strain BL23) GN=mntH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  224 REKIL-IVDADSASTLNVDGDQVPPFS---WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            RE I+   D  S S   V+G    P +   WK L  +TGPG L+++ ++DPGN    +  GA   YSLL +++ ++L+ +L+Q ++AR+G+ TGR LA++ R+         LW + E+A++  D  E+IGSAIA+
Sbjct:   10 REHIIHFEDTPSKSLDEVNGSVEVPHNAGFWKTLAAYTGPGILVAVGYMDPGNWITSIAGGASFKYSLLSVILISSLIAMLLQAMAARLGIVTGRDLAQMTRDHTSKAMGGFLWVITELAIMATDIAEIIGSAIAL 145          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACC3 (Probable manganese transport protein mntH OS=Lactobacillus casei (strain ATCC 334) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  224 REKIL-IVDADSASTLNVDGDQVPPFS---WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            RE I+   D  S S   V+G    P +   WK L  +TGPG L+++ ++DPGN    +  GA   YSLL +++ ++L+ +L+Q ++AR+G+ TGR LA++ R+         LW + E+A++  D  E+IGSAIA+
Sbjct:   10 REHIIHFEDTASKSLDEVNGSVEVPHNAGFWKTLAAYTGPGILVAVGYMDPGNWITSIAGGASFKYSLLSVILISSLIAMLLQAMAARLGIVTGRDLAQMTRDHTSKAMGGFLWVITELAIMATDIAEIIGSAIAL 145          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISW6 (Probable manganese transport protein mntH OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISMO (Probable manganese transport protein mntH OS=Listeria monocytogenes GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISMH (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISMF (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISMC (Probable manganese transport protein mntH OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LISIN (Probable manganese transport protein mntH OS=Listeria innocua GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 42/106 (39.62%), Postives = 73/106 (68.87%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++KL+ F GPG L+++ ++DPGN    +  G+  GY+LL +++ + ++ +L+Q L++++G+ TGR LA+   + +     FVLW +AE+A+I  D  EVIGSAIA+
Sbjct:   38 FRKLFAFMGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGRDLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIAL 143          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACPL (Probable manganese transport protein mntH OS=Lactobacillus plantarum GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 50/148 (33.78%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  185 SSTEDDEEVAFDSREKILIVDADSASTLNVDGD-QVPPFS--WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            + T+D  ++     + I    ADS S   V+G  +VP  +  W+ L  +TGPG L+++ ++DPGN    +  G+   Y+LL +++ ++L+ +L+Q ++AR+G+ TG+ LA+L RE         LW + E+A++  D  E+IGS IA+
Sbjct:    4 AKTKDHAKMKAAEEKAIHSTGADSKSLDEVNGSVRVPKDASFWRTLIAYTGPGALVAVGYMDPGNWITSIAGGSQYKYALLSVILLSSLIAMLLQAMAARLGIVTGKDLAQLTRERTSKGMGIFLWIITELAIMATDVAEIIGSGIAL 151          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_CLOAB (Probable manganese transport protein mntH OS=Clostridium acetobutylicum GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 40/135 (29.63%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  215 FDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++ + K + ++  S+ T N+ G          L  F GP F++S+A++DPGN   ++  G+   Y+L+W+++W+ LM + +Q +SA++G+ATG  L E+C + +   A ++ W + E+  +  D  E IG  + +
Sbjct:   11 YNIKHKTISLNRASSVTRNLKG----------LLKFLGPAFVVSVAYIDPGNFATNISGGSSFNYNLIWVILWSNLMAIFLQTMSAKLGIATGCSLPEMCAKVFSKRANWIFWIVGELGAMATDLAEFIGGTLGL 135          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_LACCB5.075e-1937.50Probable manganese transport protein mntH OS=Lacto... [more]
MNTH_LACC36.629e-1937.50Probable manganese transport protein mntH OS=Lacto... [more]
MNTH_LISW68.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMO8.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMH8.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMF8.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISMC8.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LISIN8.657e-1939.62Probable manganese transport protein mntH OS=Liste... [more]
MNTH_LACPL8.657e-1933.78Probable manganese transport protein mntH OS=Lacto... [more]
MNTH_CLOAB8.657e-1929.63Probable manganese transport protein mntH OS=Clost... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
back to top