CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_CHRSD (Probable manganese transport protein mntH OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mntH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  320 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            F GP  + ++A++DPGN   ++++G+  GY+LLW+++ A LM +LIQ LSAR+G+ATG++L ++ R  YP    +  W  AE+  I  D  E +G+A+A
Sbjct:   35 FFGPALIAAVAYIDPGNFATNIEAGSRYGYTLLWVVLAANLMAMLIQTLSARLGLATGQNLPQVIRARYPRPLVWCYWVQAEIVAIATDLAEFLGAALA 133          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAS1 (Probable manganese transport protein mntH OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mntH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 43/105 (40.95%), Postives = 70/105 (66.67%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +KL+ F GPG L+++ ++DPGN    +Q GA  GY LL++++ ++L  +L+Q ++ R+G++TG  LA+  +        FV W +AE+A+I  D  EVIGSAIA+
Sbjct:   29 QKLFSFLGPGLLVAVGYMDPGNWITSMQGGAQFGYILLFVILLSSLSAMLLQSMTIRLGISTGMDLAQATKHYLNKPVAFVFWIIAELAIIATDIAEVIGSAIAL 133          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_XYLFT (Probable manganese transport protein mntH OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mntH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 41/104 (39.42%), Postives = 67/104 (64.42%), Query Frame = 2
Query:  308 KLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +L  F GPG+++S+ ++DPGN    L  G+  GY LL +++ + +M +++Q L+AR+G+A+   LA+ CR  Y       LW + E+A+I  D  EVIG+AIA+
Sbjct:   58 RLLAFLGPGYMVSVGYMDPGNWATGLAGGSRFGYMLLSVILLSNVMAIVLQALAARLGIASDMDLAQACRARYSRGTNLALWAVCELAIIACDLAEVIGTAIAL 161          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_XYLFA (Probable manganese transport protein mntH OS=Xylella fastidiosa GN=mntH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 41/104 (39.42%), Postives = 67/104 (64.42%), Query Frame = 2
Query:  308 KLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +L  F GPG+++S+ ++DPGN    L  G+  GY LL +++ + +M +++Q L+AR+G+A+   LA+ CR  Y       LW + E+A+I  D  EVIG+AIA+
Sbjct:   58 RLLAFLGPGYMVSVGYMDPGNWATGLAGGSRFGYMLLSVILLSNVMAIVLQALAARLGIASDMDLAQACRARYSRGTTLALWVVCELAIIACDLAEVIGTAIAL 161          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_THETN (Probable manganese transport protein mntH OS=Thermoanaerobacter tengcongensis GN=mntH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 35/105 (33.33%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            KK   + GP F++S+A++DPGN   ++  G++  Y L+W+++W+ ++ + +Q+ SA++G+ATG +L E+C   +P    + LW  AE+A +  D  E +G  + +
Sbjct:   21 KKFLKYLGPAFIVSVAYVDPGNFATNISGGSLFDYHLIWVILWSNVIAIFLQIQSAKLGIATGYNLPEMCSIIFPRKWNWFLWITAELAAMATDLAEFLGGTMGL 125          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAW (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain MW2) GN=mntH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+++ ++DPGN    +Q GA  GY+LL++++ ++L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAVGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAS (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain MSSA476) GN=mntH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+++ ++DPGN    +Q GA  GY+LL++++ ++L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAVGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAN (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain N315) GN=mntH PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+++ ++DPGN    +Q GA  GY+LL++++ ++L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAVGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAM (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mntH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+++ ++DPGN    +Q GA  GY+LL++++ ++L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAVGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_STAAE (Probable manganese transport protein mntH OS=Staphylococcus aureus (strain Newman) GN=mntH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +K   F GPG L+++ ++DPGN    +Q GA  GY+LL++++ ++L  +L+Q ++ R+G+ATG  LA++ R         + W +AE+A+I  D  EVIGSAIA+
Sbjct:   31 QKFLSFLGPGLLVAVGYMDPGNWITSMQGGAQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHYLSRPIAIIFWIIAELAIIATDIAEVIGSAIAL 135          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_CHRSD8.657e-1941.41Probable manganese transport protein mntH OS=Chrom... [more]
MNTH_STAS12.519e-1840.95Probable manganese transport protein mntH OS=Staph... [more]
MNTH_XYLFT3.290e-1839.42Probable manganese transport protein mntH OS=Xylel... [more]
MNTH_XYLFA3.290e-1839.42Probable manganese transport protein mntH OS=Xylel... [more]
MNTH_THETN4.297e-1833.33Probable manganese transport protein mntH OS=Therm... [more]
MNTH_STAAW4.297e-1840.00Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAAS4.297e-1840.00Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAAN4.297e-1840.00Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAAM4.297e-1840.00Probable manganese transport protein mntH OS=Staph... [more]
MNTH_STAAE4.297e-1840.00Probable manganese transport protein mntH OS=Staph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
back to top