CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  299 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            SWK  + + GPGFL+SIA++DPGN E DLQSGA   Y LLW+++ A+   L+IQ L+A +GV TG+HLAE CR EY     F+LW +AE+A++  D  EVIG+A A+
Sbjct:   34 SWKNFFSYLGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFAL 140          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.812e-28
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  299 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            SWK  + + GPGFL+SIA++DPGN E DLQ+GA   Y LLW+++ A+   L+IQ L+A +GV TG+HLAE CR EY     F+LW +AE+A++  D  EVIG+A A+
Sbjct:   42 SWKNFFAYLGPGFLVSIAYIDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFAL 148          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_RHILO (Probable manganese transport protein mntH OS=Rhizobium loti GN=mntH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            +++L+ F GPG+++S+ ++DPGN   DL  GA  GY+LL+++M + LM +L+Q L+AR+G+ATGR LA+ CR  YP    FVLW   E+A+I  D  EVIG+AIA+
Sbjct:   42 FRRLFAFMGPGYMVSVGYMDPGNWATDLAGGAQFGYTLLFVIMLSNLMAILLQALAARLGIATGRDLAQACRAYYPRPVNFVLWIACELAIIACDLAEVIGTAIAL 147          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_PECCP (Probable manganese transport protein mntH OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mntH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++QSGA  GY+LLW+++WA LM +LIQLLSA++G+ATG++LAE  R+ +P  A +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQSGAAYGYTLLWVVVWANLMAMLIQLLSAKLGIATGKNLAEHIRDRFPRPAVWAYWVQAEIIAMATDLAEFIGAAI 118          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_BRAJA (Probable manganese transport protein mntH OS=Bradyrhizobium japonicum GN=mntH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W++L  F GPG+L+S+ ++DPGN   DL  G+  GY+LL +++ + LM +L+Q L+AR+G+ T R LA+ CR  Y     F+LW   E A+I  D  EVIG+AIA+
Sbjct:   41 WRRLLAFVGPGYLVSVGYMDPGNWATDLAGGSKFGYTLLSVILLSNLMAILLQSLAARLGIVTDRDLAQACRATYSPAVNFLLWLACEAAIIACDLAEVIGTAIAL 146          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_XANAC (Probable manganese transport protein mntH OS=Xanthomonas axonopodis pv. citri GN=mntH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.686e-22
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W +L  F GPG+++S+ ++DPGN   DL  G+  GY LL +++ + LM +++Q LSAR+G+ATG  LA+ CR  YP      LW + E+A+I  D  EVIG+AIA+
Sbjct:   35 WSRLLAFLGPGYMVSVGYMDPGNWATDLAGGSQFGYLLLSVILLSNLMAIVLQGLSARLGIATGLDLAQACRARYPRGVNLALWGICELAIIACDLAEVIGTAIAL 140          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ACICJ (Probable manganese transport protein mntH OS=Acidiphilium cryptum (strain JF-5) GN=mntH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W+   +F GP  + SIA++DPGN   ++Q+GA  GY LLW+++ A+L+ +L Q LSAR+G+ TGR+LAELCR+  P      +W ++E+A +  D  E +G AI I
Sbjct:   28 WRNPLIFAGPAVVASIAYMDPGNFATNIQAGARYGYDLLWVVLLASLIAMLFQGLSARLGIVTGRNLAELCRDTLPPALTIPMWIISEIAAMATDLAEFLGGAIGI 133          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_XANCP (Probable manganese transport protein mntH OS=Xanthomonas campestris pv. campestris GN=mntH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W +L  F GPG+++S+ ++DPGN   DL  G+  GY LL +++ + LM +++Q LSAR+G+ATG  LA+ CR  YP      LW + E+A+I  D  EVIG+AIA+
Sbjct:   35 WFRLLAFLGPGYMVSVGYMDPGNWATDLAGGSQFGYLLLSVILLSNLMAIVLQGLSARLGIATGLDLAQACRARYPRGINLALWGLCELAIIACDLAEVIGTAIAL 140          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ANASP (Probable manganese transport protein mntH OS=Anabaena sp. (strain PCC 7120) GN=mntH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W+K+  + GPG+L+S+ ++DPGN   D+  G+  GY+LL +++ + LM +L+Q L  R+GVATGR LA+ CR+ +     F LW + E+A+   D  E++GSAIA+
Sbjct:   26 WRKMLAYAGPGYLVSVGYIDPGNWATDIAGGSKFGYTLLTVILLSNLMAILLQSLCVRLGVATGRDLAQACRDYFSPKVSFCLWVLCEIAIAACDLAELLGSAIAL 131          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_YERPY (Probable manganese transport protein mntH OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mntH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 44/96 (45.83%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +IA++DPGN   ++Q+GA  GY+LLW+++WA +M +L+QLLSA++G+ATG++LAE  R+ +P    +  W  AE+ ++  D  E IG+AI
Sbjct:   23 GPAFIAAIAYIDPGNFATNIQAGATFGYTLLWVVVWANVMAMLVQLLSAKLGIATGKNLAEHIRDRFPRPVVWAYWVQAEIIVMATDLAEFIGAAI 118          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
NRAM6_ARATH5.981e-2853.27Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
NRAM1_ARATH7.812e-2852.34Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
MNTH_RHILO2.127e-2549.06Probable manganese transport protein mntH OS=Rhizo... [more]
MNTH_PECCP1.291e-2248.96Probable manganese transport protein mntH OS=Pecto... [more]
MNTH_BRAJA1.291e-2245.28Probable manganese transport protein mntH OS=Brady... [more]
MNTH_XANAC1.686e-2245.28Probable manganese transport protein mntH OS=Xanth... [more]
MNTH_ACICJ2.875e-2244.34Probable manganese transport protein mntH OS=Acidi... [more]
MNTH_XANCP3.755e-2245.28Probable manganese transport protein mntH OS=Xanth... [more]
MNTH_ANASP3.755e-2242.45Probable manganese transport protein mntH OS=Anaba... [more]
MNTH_YERPY4.905e-2245.83Probable manganese transport protein mntH OS=Yersi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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