CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLI (Manganese transport protein mntH OS=Escherichia coli (strain K12) GN=mntH PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOLC (Manganese transport protein mntH OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOL6 (Manganese transport protein mntH OS=Escherichia coli O6 GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOL5 (Manganese transport protein mntH OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOK1 (Manganese transport protein mntH OS=Escherichia coli O1:K1 / APEC GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOHS (Manganese transport protein mntH OS=Escherichia coli O9:H4 (strain HS) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECODH (Manganese transport protein mntH OS=Escherichia coli (strain K12 / DH10B) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECOBW (Manganese transport protein mntH OS=Escherichia coli (strain K12 / BW2952) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECO8A (Manganese transport protein mntH OS=Escherichia coli O8 (strain IAI1) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
[Close]
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_ECO81 (Manganese transport protein mntH OS=Escherichia coli O81 (strain ED1a) GN=mntH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+GA  GY LLW+++WA LM +LIQ+LSA++G+ATG++LAE  R+ YP    +  W  AE+  +  D  E IG+AI
Sbjct:   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAI 118
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_ECOLI8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOLC8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOL68.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOL58.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOK18.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOHS8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECODH8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECOBW8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO8A8.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]
MNTH_ECO818.366e-2246.88Manganese transport protein mntH OS=Escherichia co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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