CV884662

Overview
NameCV884662
Unique NameCV884662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_AGRT5 (Probable manganese transport protein mntH OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=mntH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 43/107 (40.19%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  299 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++++   F GPG+L+++ ++DPGN    L  G+  GY+LL + + + +M +++Q L AR+ +A+GR LA+ CR+ YP     VLW +AE+A+I  D  EVIG+AI +
Sbjct:   52 TFRRAMAFFGPGYLVAVGYMDPGNWATSLAGGSKFGYTLLAVALVSNIMAIVLQSLCARLAIASGRDLAQACRDAYPKPVAMVLWLLAEIAIIATDIAEVIGTAIGL 158          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_BRUSU (Probable manganese transport protein mntH OS=Brucella suis GN=mntH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  161 LLPIPSPPSSTEDDEEVAFDS----REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++P  S PS      EV F+     R +  + D      +N  G +     +++   F GPG+L+++ ++DPGN    L  G+  GY+LL +++ + LM +L+Q L  R+ VATGR LA+ CR+ YP +  + LW +AE+A+   D  EVIG+AI +
Sbjct:    1 MVPHGSCPSGAR---EVTFEGWRRERGEASMSDVHRTIRVNRSGSK-----FRRALSFFGPGYLVAVGYMDPGNWATSLAGGSRFGYALLSVVLLSNLMAVLLQALCTRLAVATGRDLAQACRDAYPRFLAWPLWLLAELAICATDLAEVIGTAIGL 149          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_BRUME (Probable manganese transport protein mntH OS=Brucella melitensis GN=mntH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  161 LLPIPSPPSSTEDDEEVAFDS----REKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            ++P  S PS      EV F+     R +  + D      +N  G +     +++   F GPG+L+++ ++DPGN    L  G+  GY+LL +++ + LM +L+Q L  R+ VATGR LA+ CR+ YP +  + LW +AE+A+   D  EVIG+AI +
Sbjct:    1 MVPHGSCPSGAR---EVTFEGWRRERGEASMSDVHRTIRVNRSGSK-----FRRALSFFGPGYLVAVGYMDPGNWATSLAGGSRFGYALLSVVLLSNLMAVLLQALCTRLAVATGRDLAQACRDAYPRFLAWPLWLLAELAICATDLAEVIGTAIGL 149          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_AERHH (Probable manganese transport protein mntH OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mntH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = 2
Query:  326 GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAI 613
            GP F+ +I ++DPGN   ++Q+G+  GY LLW+++WA LM +L+Q LSA++G+ TG++LAE  R+  P  A +  W  AE+  +  D  E IG+A+
Sbjct:   25 GPAFIAAIGYIDPGNFATNIQAGSTFGYQLLWVVVWANLMAMLVQTLSAKLGIVTGKNLAEHIRDRLPKPAVWAYWVQAEIIAMATDLAEFIGAAV 120          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: NRAM2_DICDI (Natural resistance-associated macrophage protein 2 homolog OS=Dictyostelium discoideum GN=nramp2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  296 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            FS KKL  F GP   +S+ ++DPGN   DL+ G+  GY L+W+L+++ +M L +Q L  ++ + T   LA+ CR+EY       LW + E+A+I  D  EVIG+AI +
Sbjct:  145 FSIKKLKSFLGPALFISVGYMDPGNWATDLEGGSRFGYQLMWVLLFSNIMALFLQTLVIKLALVTKNDLAQQCRKEYSKTVNIFLWLILELAIISTDLAEVIGTAIGL 252          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH1_PSEAE (Manganese transport protein mntH1 OS=Pseudomonas aeruginosa GN=mntH1 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.023e-19
Identity = 44/104 (42.31%), Postives = 73/104 (70.19%), Query Frame = 2
Query:  305 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIA 616
            +KL LF GPG L+S+ ++DPGN    +++G+  GY+LL++++ A+  G+L+Q L +R+G+ATGR LA+L RE Y        W +AE++++  D  EV+G+A+A
Sbjct:   32 RKLALFVGPGLLVSVGYMDPGNWATAIEAGSRFGYALLFVVVLASFSGMLLQSLCSRLGIATGRDLAQLSRERYRPGVARGQWLLAELSIVATDLAEVLGAALA 135          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACBA (Probable manganese transport protein mntH OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=mntH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.744e-19
Identity = 43/106 (40.57%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  302 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            W+ L  +TGPG L+++ ++DPGN    +  GA   Y+LL +++ ++L+ +L+Q +SAR+G+ TG+ LA+L RE       F LW + E+A++  D  E+IGSAIA+
Sbjct:   41 WRTLMAYTGPGALIAVGYMDPGNWITSIAGGAQYKYTLLTVVLLSSLVAMLLQAMSARLGIVTGKDLAQLTREHTGKRTGFALWIITELAIMATDIAEIIGSAIAL 146          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_LACBR (Manganese transport protein mntH OS=Lactobacillus brevis GN=mntH PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 50/143 (34.97%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  203 EEVAFDSREKIL-IVDADSASTLNVDGDQVPPFS---WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            E VA + + K     + ++ S   V+G    P +   W+ L+ +TGPG L+++ ++DPGN    +  GA   YSLL +++ ++L+ +L+Q ++AR+G+ TG+ LA+L RE        +LW + E A++  D  E+IGS IAI
Sbjct:    9 ESVAEEPKHKFFQSTEGENKSLDEVNGSVKVPKNAGFWRTLFAYTGPGILIAVGYMDPGNWITSIAGGAQFKYSLLSVILISSLIAMLLQSMAARLGIVTGKDLAQLTRERTSKTMGIILWLITESAIMATDVAEIIGSGIAI 151          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_MYCTU (Probable manganese transport protein mntH OS=Mycobacterium tuberculosis GN=mntH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  299 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            S K  W   GP F+ +IA++DPGN+  ++ SGA  GY LLW+++ A +M  L+Q LSA++G+ TGR L E   +     AR   W  AE+  +  D  EVIG AIA+
Sbjct:   28 SLKTSWYLLGPAFVAAIAYVDPGNVAANVSSGAQFGYLLLWVIVAANVMAALVQYLSAKLGLVTGRSLPEAIGKRMGRPARLAYWAQAEIVAMATDVAEVIGGAIAL 134          
BLAST of CV884662 vs. ExPASy Swiss-Prot
Match: MNTH_MYCBO (Probable manganese transport protein mntH OS=Mycobacterium bovis GN=mntH PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  299 SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATLMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADFQEVIGSAIAI 619
            S K  W   GP F+ +IA++DPGN+  ++ SGA  GY LLW+++ A +M  L+Q LSA++G+ TGR L E   +     AR   W  AE+  +  D  EVIG AIA+
Sbjct:  284 SLKTSWYLLGPAFVAAIAYVDPGNVAANVSSGAQFGYLLLWVIVAANVMAALVQYLSAKLGLVTGRSLPEAIGKRMGRPARLAYWAQAEIVAMATDVAEVIGGAIAL 390          
The following BLAST results are available for this feature:
BLAST of CV884662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MNTH_AGRT52.691e-2040.19Probable manganese transport protein mntH OS=Agrob... [more]
MNTH_BRUSU3.515e-2035.03Probable manganese transport protein mntH OS=Bruce... [more]
MNTH_BRUME3.515e-2035.03Probable manganese transport protein mntH OS=Bruce... [more]
MNTH_AERHH4.590e-2042.71Probable manganese transport protein mntH OS=Aerom... [more]
NRAM2_DICDI5.995e-2040.74Natural resistance-associated macrophage protein 2... [more]
MNTH1_PSEAE1.023e-1942.31Manganese transport protein mntH1 OS=Pseudomonas a... [more]
MNTH_LACBA1.744e-1940.57Probable manganese transport protein mntH OS=Lacto... [more]
MNTH_LACBR3.886e-1934.97Manganese transport protein mntH OS=Lactobacillus ... [more]
MNTH_MYCTU5.075e-1942.99Probable manganese transport protein mntH OS=Mycob... [more]
MNTH_MYCBO5.075e-1942.99Probable manganese transport protein mntH OS=Mycob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884662 ID=CV884662; Name=CV884662; organism=Citrus sinensis; type=EST; length=619bp
GACCGTTTTCACCAGTCCTCAGAGGTGAGATCTGTGGAACAGAATCTACT
GCCGAGTTTGGAATATTCCGTGCGTAGATAAAACAAAGAAAGTGAAAATG
GACTCCTCCGAAACCCGAGAAGAAGAAAGCGGGTCCAAAGACAGCAATGA
AACCAACCGCCTCCTTCCAATACCGTCACCACCGTCCTCAACGGAGGACG
ACGAGGAAGTCGCGTTCGATTCACGAGAGAAAATCTTGATCGTCGACGCA
GATTCAGCCTCCACGTTGAACGTTGACGGTGACCAAGTGCCGCCTTTTTC
GTGGAAAAAGCTTTGGTTATTCACTGGACCCGGTTTCTTAATGAGCATAG
CGTTTCTGGATCCGGGGAATCTGGAGGGGGATCTCCAATCGGGGGCGATA
GCAGGGTACTCGCTTCTTTGGTTGCTAATGTGGGCCACCCTCATGGGCTT
GCTTATTCAGCTGCTGTCGGCACGAGTAGGGGTGGCCACGGGGCGTCACT
TGGCAGAGCTGTGTAGAGAGGAGTACCCCAATTGGGCGCGATTCGTGTTG
TGGTTCATGGCTGAAGTGGCCTTGATTGGTGCCGATTTTCAGGAAGTAAT
TGGGAGTGCCATTGCTATC
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