CV884651

Overview
NameCV884651
Unique NameCV884651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17
Identity = 66/218 (30.28%), Postives = 110/218 (50.46%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            LL+A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A +   F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  201 LLNAMDEYIPTPQREVDKPFLMPIEDVFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHK--RFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.393e-17
Identity = 66/218 (30.28%), Postives = 109/218 (50.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            LL+A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A     F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  201 LLNAMDEYIPTPEREVDKPFLMPIEDVFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHR--KFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.126e-17
Identity = 69/225 (30.67%), Postives = 111/225 (49.33%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L+D +D+ I  PKR  +KP  + ++DV+ I G GTV  GRVE GV+K G    +V  G + +TT V  +EM  + L E++ GDNVG  ++ +   +++RG V +  K        NF +QV ++N           +GY P     T+ +  K     T     +G+ +    K +  GD   +K    +P+ +E         RFA+R+  +TV  GV+  + K
Sbjct:  202 LMDIVDSYIPTPKRNIEKPFLMAIEDVFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.094e-17
Identity = 66/218 (30.28%), Postives = 108/218 (49.54%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+DA+D+ I  PKR +DK   +P++D++ I G GTV  GRVE G++K G    +V   P+  TT V  VEM  + L E   GDNVG  ++  A +D++RG V +  K         F ++V I+    + G  + P  + +     V+ +++   I    G E+      +  GD   + +    P+ +E  +      RFA+R+   TV  GV+  +
Sbjct:  197 LMDAVDSYIPTPKRDTDKDFLMPIEDIFSISGRGTVVTGRVEKGIVKVGDTVELVGIKPT-QTTTVTGVEMFRKELDEGEAGDNVGVLLRGTAKEDVERGMVLAKPKS--ITPHTKFEAEVYILTK--EEGGRHTPFFNNYRPQFYVRTTDVTGSIQLPEGTEM------VMPGDNVKITVELIHPIALEQGT------RFAIREGGHTVGSGVVSKI 397          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 65/219 (29.68%), Postives = 114/219 (52.05%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L+ A+D+ I +P+RP DKP  +P++DV+ I G GTV  GRVETG++K G  V       T  T V  VEM  + L +   GDN+G  ++ V  ++++RG V   +K    +   +F+S+V +++   + G  + P    +      + +++   ++   G E+      +K G    VK+I   P+ +E         RF++R+  +TV  GV+ ++ K
Sbjct:  194 LMAAVDSYIPQPERPLDKPFLMPIEDVFSISGRGTVVTGRVETGMVKVGEEVEIVGIKDTRKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREEVERGQVL--AKPGSIKPHTDFSSEVYVLSK--EEGGRHTPFFANYRPQFYFRTTDVTGTVELPEGTEMVMPGDNVKLG----VKLI--APIAMEEGL------RFSIREGGRTVGAGVVSSISK 396          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.026e-16
Identity = 64/218 (29.36%), Postives = 105/218 (48.17%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    +V F P    T V  +EM  + L EA+ GDNVG  ++ +   +++RG V   +K    +    F +QV ++    + G  + P  + +      + +++   I    G E+         GD   + +    P+ +E+        RFA+R+  +TV  G +  +
Sbjct:  197 LMDAVDKYIPTPQRDIDKPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVL--AKPGTIKPHTKFKAQVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGTITLPEGVEM------CMPGDNVEMTVELISPIAIESGL------RFAIREGGRTVGAGSVTTI 398          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 67/233 (28.76%), Postives = 113/233 (48.50%), Query Frame = -3
Query:  206 NMIERSTN--LDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQE-ALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 895
            N+I++ ++    WYKGPTLL ALD +  P++P  KPLRL + DVY+     TV  GRVE G ++   V+    S     VK+V  + +     A+ GD V   + ++ V  L+ G + SN  ++P R   +F +++   +  G I +G   VL  H        S  +  ++ +  + +    + L      +  +    P+ +    + P LGRF +R    TVA G++K +
Sbjct:  369 NLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN-YENPVRRVRSFVAEIQTFDIHGPILSGSTLVL--HLGRTVTSVSLKIVTVNNKRSRHIASRKRAL----VRISFLDGLFPLCLA--EECPALGRFILRRSGDTVAAGIVKEL 591          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 63/221 (28.51%), Postives = 113/221 (51.13%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L +ALD  I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  +     G+T  VK+    VEM  + L +   GDNVG  ++    ++++RG V   +K    +    F++++ +++     G  + P  + +      + +++   I+  +G E+      +  GD   +K+   +P+ ++         RFA+R+  +TV  GV+  +E+
Sbjct:  194 LAEALDTYIPEPERAIDKPFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEI--VGITPTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVQRGQVL--AKPGSIKPHTKFSAEIYVLSK--DEGGRHTPFFNGYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVSIKVSLIQPIAMDEGL------RFAIREGGRTVGAGVVAKIEE 396          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_NEPOL (Elongation factor Tu, chloroplastic OS=Nephroselmis olivacea GN=tufA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 69/223 (30.94%), Postives = 109/223 (48.88%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKNV 847
            L+DA+D  I  PKR +DK   + ++DV+ I G GTV  GRVE G +K G    +V   P+  TT V  +EM  + L +++ GDNVG  ++ +  +D++RG V +  +         F SQV ++    + G  + P    +     V+ +++  KID     +          G+A MV       MVVE      P+      RFA+R+  +TV  GV+ N+
Sbjct:  203 LMDAVDQYIPTPKRDTDKSFLMAVEDVFSITGRGTVATGRVERGSVKLGDTIEIVGLKPTRETT-VTGLEMFQKTLDQSVAGDNVGILLRGIQKEDIQRGMVLAAPR--TITPHTKFESQVYVLTK--EEGGRHTPFFPGYRPQFYVRTTDVTGKIDSFRADD---------GGEATMVMPGDRVKMVVELIQ---PIAIEKGMRFAIREGGRTVGAGVVSNI 408          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BLOFL (Elongation factor Tu OS=Blochmannia floridanus GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 70/219 (31.96%), Postives = 107/219 (48.86%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L   LDN I EPKR  DKP  LP++DV+ I G GTV  GRVE+G++K G  V     G+   VK+    +EM  + L E   G+NVG  ++     +++RG V   SK    +  +NF S+V I+N     G  + P    +      + +++   I      EL KE + +  GD   + +    P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  192 LSSILDNYIPEPKRSIDKPFLLPIEDVFSISGRGTVVTGRVESGIIKVGEEVEI--VGIKDTVKTTCTGIEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVL--SKPGCIKPHSNFESEVYILNK--DEGGRHTPFFKGYRPQFYFRTTDVTGTI------ELPKEVEMVMPGDNIKMVVHLISPIAMDDGL------RFAIREGGRTVGAGVVSRV 392          
The following BLAST results are available for this feature:
BLAST of CV884651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_AQUAE1.832e-1730.28Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_AQUPY2.393e-1730.28Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_PROWI3.126e-1730.67Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_CAMHC9.094e-1730.28Elongation factor Tu OS=Campylobacter hominis (str... [more]
EFTU_SPHWW1.551e-1629.68Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_ANATD2.026e-1629.36Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
HBS1_SCHPO2.646e-1628.76Elongation factor 1 alpha-like protein OS=Schizosa... [more]
EFTU_THIDA2.646e-1628.51Elongation factor Tu OS=Thiobacillus denitrificans... [more]
EFTU_NEPOL2.646e-1630.94Elongation factor Tu, chloroplastic OS=Nephroselmi... [more]
EFTU_BLOFL2.646e-1631.96Elongation factor Tu OS=Blochmannia floridanus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884651 ID=CV884651; Name=CV884651; organism=Citrus sinensis; type=EST; length=900bp
TTTATCAACTTACCAAAAAAAAACTCTGATATAAAACCAAATTCAGAGAA
TTAAAATGAAGTCCCGTAAAACAAACTAAAACACGACAAAAATAGCATAA
ACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCCAAAAAACTCCTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATGTCACCAC
CATACCAGGCTTGAGGACACCGGTCTCAACGCGACCCACTGGGACGGTTC
CAATGCCACCAATCTTGTACACGTCCTGGAGTGGCAGACGAAGGGGCTTG
TCTGAGGGCCTCTTCGGCTCATTGATATTGTCCAGAGCGTCCAGCAGGGT
TGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTGTCCC
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