CV884651

Overview
NameCV884651
Unique NameCV884651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_ACTSZ (Elongation factor Tu OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 63/219 (28.77%), Postives = 108/219 (49.32%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MVVTFGPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L +ALD+ I EP+R  D+P  LP++DV+ I G GTV  GRVE G+++ G  V   G    T T V  VEM  + L E   G+N+G  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+ +V K
Sbjct:  192 LANALDSYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTTKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVL--AKPGSITPHTDFVSEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNVKMTVSLIHPIAMDQGL------RFAIREGGRTVGAGVVASVIK 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBT (Elongation factor Tu OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+ ALD+ I EP+R  DK   +P++DV+ I G GTV  GRVE G++K G  V        + T V  VEM  + L E   G+N G  ++    ++++RG V   +K    +    F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++      P  RFA+R+  +TV  GV+  V
Sbjct:  194 LVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVL--AKPGTIKPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEM------VMPGDNVEMSVELIHPIAMD------PGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_ACIB3 (Elongation factor Tu OS=Acinetobacter baumannii (strain AB307-0294) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 61/217 (28.11%), Postives = 106/217 (48.85%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+ ALD+ I EP+R  DK   +P++DV+ I G GTV  GRVE G++K G  V        + T V  VEM  + L E   G+N G  ++    ++++RG V   +K    +    F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++      P  RFA+R+  +TV  GV+  V
Sbjct:  194 LVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVL--AKPGTIKPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEM------VMPGDNVEMSVELIHPIAMD------PGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 60/220 (27.27%), Postives = 106/220 (48.18%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  + +
Sbjct:  197 LMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEM------VMPGDNVRIDIDLITPIAIEEGL------RFAIREGGRTVGAGVVTGIRE 400          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 60/220 (27.27%), Postives = 103/220 (46.82%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L+ A+D  I EP+R  DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   +K+   +P+ +E         +FA+R+  +TV  G +  + K
Sbjct:  194 LMKAVDEAIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMKVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESR (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMKVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESM (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMKVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 60/220 (27.27%), Postives = 106/220 (48.18%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++    + G  + P  + +      + +++   +    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  + +
Sbjct:  197 LMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEM------VMPGDNVRIDIDLITPIAIEEGL------RFAIREGGRTVGAGVVTGIRE 400          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPW (Elongation factor Tu OS=Synechococcus sp. (strain WH7803) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 60/220 (27.27%), Postives = 103/220 (46.82%), Query Frame = -3
Query:  206 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEL---VTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+ A+D NI EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G  +       T  T V  VEM  + L E + GDNVG  ++ +  +D++RG V    K         F  +V ++    + G  + P    +     ++ +++   +T      G ++E     +  GD   +      P+ +E         RFA+R+  +T+  GV+  +
Sbjct:  192 LMQAVDANIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVL--VKPGSITPHTKFEGEVYVLKK--EEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSDVE----MVMPGDRIKMTGELICPVAIEQGM------RFAIREGGRTIGAGVVSKI 397          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_STRZT (Elongation factor Tu OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 60/219 (27.40%), Postives = 105/219 (47.95%), Query Frame = -3
Query:  203 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 847
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+      +  GD   + +    P+ VE  +       F++R+  +TV  G++  +E
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM------VMPGDNVTIDVELIHPIAVEQGT------TFSIREGGRTVGSGMVTEIE 397          
The following BLAST results are available for this feature:
BLAST of CV884651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ACTSZ9.411e-1428.77Elongation factor Tu OS=Actinobacillus succinogene... [more]
EFTU_ACIBT9.411e-1428.11Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU_ACIB39.411e-1428.11Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU2_PELTS9.411e-1427.27Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU1_STRCO9.411e-1427.27Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_SHESR9.411e-1428.57Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_SHESM9.411e-1428.57Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]
EFTU1_PELTS9.411e-1427.27Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
EFTU_SYNPW1.229e-1327.27Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STRZT1.229e-1327.40Elongation factor Tu OS=Streptococcus pneumoniae (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884651 ID=CV884651; Name=CV884651; organism=Citrus sinensis; type=EST; length=900bp
TTTATCAACTTACCAAAAAAAAACTCTGATATAAAACCAAATTCAGAGAA
TTAAAATGAAGTCCCGTAAAACAAACTAAAACACGACAAAAATAGCATAA
ACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCCAAAAAACTCCTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATGTCACCAC
CATACCAGGCTTGAGGACACCGGTCTCAACGCGACCCACTGGGACGGTTC
CAATGCCACCAATCTTGTACACGTCCTGGAGTGGCAGACGAAGGGGCTTG
TCTGAGGGCCTCTTCGGCTCATTGATATTGTCCAGAGCGTCCAGCAGGGT
TGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTGTCCC
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