CV884651

Overview
NameCV884651
Unique NameCV884651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:253..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_METPP (Elongation factor Tu OS=Methylibium petroleiphilum (strain PM1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 58/217 (26.73%), Postives = 104/217 (47.93%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I  P+R  D    +P++DV+ I G GTV  GRVE G++K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT+++ +++   + G  + P  + +      + +++   +      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LAEALDSYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGISATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVL--CKPGSVKPHTHFTAEIYVLSK--EEGGRHTPFFNNYRPQFYFRTTDVTGAV------ELPKDKEMVMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 61/218 (27.98%), Postives = 100/218 (45.87%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            LLD +D  I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      + + V  VEM H+ L     GDNVG  ++ V+   ++RG V   ++    +    F  +V +M    + G  + P    +        +++   I+   G E+      +  GD     +   KP+ +E         +F +R+   TV  GV+  V
Sbjct:  193 LLDVVDEYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKIGDEVEIVGLKEDVIKSTVTGVEMFHKTLDLGEAGDNVGILLRGVSHDQIERGQVL--AEPGSIQTHKQFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM------VMPGDNVTFTVELQKPVALEKGL------KFTIREGGHTVGAGVVSEV 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_HAMD5 (Elongation factor Tu OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 64/221 (28.96%), Postives = 107/221 (48.42%), Query Frame = -3
Query:  200 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK--PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 847
            L +ALD  I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K    + +      +TT    +EM  + L E   G+NVG  ++ +  ++++RG V   +K         F ++V I+    + G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V K
Sbjct:  192 LANALDKYIPEPQRDIDKPFLLPIEDVFSISGRGTVVTGRVERGMIKTSDSVEIVGIKDTVTTTCTGIEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGSINPHTKFEAEVYILTK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMLVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKVIK 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURTA (Elongation factor Tu OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURPS (Elongation factor Tu OS=Burkholderia pseudomallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURP6 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 668) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURP1 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1710b) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURP0 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1106a) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURMS (Elongation factor Tu OS=Burkholderia mallei (strain SAVP1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_BURMA (Elongation factor Tu OS=Burkholderia mallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 62/217 (28.57%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L DALD  I  P+R  D    +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V   +K        +FT++V +++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  194 LADALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--AKPGSITPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
The following BLAST results are available for this feature:
BLAST of CV884651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_METPP1.605e-1326.73Elongation factor Tu OS=Methylibium petroleiphilum... [more]
EFTU_LACF31.605e-1327.98Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_HAMD51.605e-1328.96Elongation factor Tu OS=Hamiltonella defensa subsp... [more]
EFTU_BURTA1.605e-1328.57Elongation factor Tu OS=Burkholderia thailandensis... [more]
EFTU_BURPS1.605e-1328.57Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP61.605e-1328.57Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP11.605e-1328.57Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP01.605e-1328.57Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURMS1.605e-1328.57Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURMA1.605e-1328.57Elongation factor Tu OS=Burkholderia mallei GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884651 ID=CV884651; Name=CV884651; organism=Citrus sinensis; type=EST; length=900bp
TTTATCAACTTACCAAAAAAAAACTCTGATATAAAACCAAATTCAGAGAA
TTAAAATGAAGTCCCGTAAAACAAACTAAAACACGACAAAAATAGCATAA
ACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCCAAAAAACTCCTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATGTCACCAC
CATACCAGGCTTGAGGACACCGGTCTCAACGCGACCCACTGGGACGGTTC
CAATGCCACCAATCTTGTACACGTCCTGGAGTGGCAGACGAAGGGGCTTG
TCTGAGGGCCTCTTCGGCTCATTGATATTGTCCAGAGCGTCCAGCAGGGT
TGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTGTCCC
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