CV884651

Overview
NameCV884651
Unique NameCV884651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:253..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU_AZOPC (Elongation factor Tu OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 60/218 (27.52%), Postives = 104/218 (47.71%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L+DA+DN I  P+R  DK   +P++DV+ I G GTV  GR+ETG+++ G    ++    +G  + V  VEM  + L E   GDNVG  ++ V   ++KRG V ++   +  +      ++V I+    + G  + P  + +     V+  ++  +I    G E+      +  GD   + +    P+            RFA+R+  +TV  G I  +
Sbjct:  192 LMDAIDNWIPLPQRDIDKSFLMPVEDVFSITGRGTVATGRIETGLVRTGDEVQIIGLDANGKKSVVTGVEMFRKILDEGQAGDNVGLLLRGVDKDEVKRGMVITH--PNKVKPHTKVKAEVYILKK--EEGGRHTPFHNKYRPQFYVRTLDVTGEITLPEGTEM------VMPGDNVTITIELIYPVACNEGL------RFAIREGGRTVGAGQITEI 393          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 62/218 (28.44%), Postives = 105/218 (48.17%), Query Frame = -3
Query:  206 LDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 835
            +DN++E    P+R ++ P  + ++DV+ I G GTV  GRVE G +K G +V     GL     T V  VEM  + L EA+ GDNVG  ++ +   D++RG V   +K         F + V ++    + G  ++P    +     ++ +++  K+      + E E K +  GD   + +    P+  E         RFA+R+  +TV  GVI+ +
Sbjct:  279 MDNVDEYIPIPQRQTELPFLMAIEDVFSITGRGTVATGRVERGTVKVGEIVDI--VGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVL--AKPGTITPHTKFEALVYVLKK--EEGGRHSPFFAGYRPQFYMRTTDVTGKVTVIMSDKGE-ESKMVMPGDRVNMVVELIMPVACEQGM------RFAIREGGKTVGAGVIQKI 483          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_SHISS (Elongation factor Tu 2 OS=Shigella sonnei (strain Ss046) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = -3
Query:  206 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 826
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_SHIF8 (Elongation factor Tu 2 OS=Shigella flexneri serotype 5b (strain 8401) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = -3
Query:  206 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 826
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESR (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-7) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 64/219 (29.22%), Postives = 105/219 (47.95%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK--PMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G+++ G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   SK         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDSYIPEPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGIVRVGDEVEIVGIRTTTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVL--SKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB9 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS195) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 65/219 (29.68%), Postives = 105/219 (47.95%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK--PMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   +K         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LANALDSYIPEPQRDIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVL--AKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB5 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 65/219 (29.68%), Postives = 105/219 (47.95%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK--PMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   +K         F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LANALDSYIPEPQRDIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVL--AKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLICPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOPR (Elongation factor Tu 2 OS=Photobacterium profundum GN=tuf2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 61/217 (28.11%), Postives = 102/217 (47.00%), Query Frame = -3
Query:  206 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 847
            L +ALDN I EP+R  D P  LP++DV+ I G GTV  GRVE G+++ G  + +       TT    VEM  + L E   G+NVG  ++     D++RG V   +K         F S++ +++     G  + P    +      + +++   I+   G E+      +  GD   +K+    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  192 LAEALDNYIPEPERAIDLPFILPIEDVFSIQGRGTVVTGRVEQGIVRIGEEVAIIGIKETTTTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVL--AKPGSITPHTTFESEIYVLSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIQMKVTLIAPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOUT (Elongation factor Tu 2 OS=Escherichia coli (strain UTI89 / UPEC) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = -3
Query:  206 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 826
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CV884651 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOLC (Elongation factor Tu 2 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 64/213 (30.05%), Postives = 103/213 (48.36%), Query Frame = -3
Query:  206 INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 826
            I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
The following BLAST results are available for this feature:
BLAST of CV884651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_AZOPC2.096e-1327.52Elongation factor Tu OS=Azobacteroides pseudotrich... [more]
EFTUB_NICSY2.096e-1328.44Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
EFTU2_SHISS2.096e-1330.05Elongation factor Tu 2 OS=Shigella sonnei (strain ... [more]
EFTU2_SHIF82.096e-1330.05Elongation factor Tu 2 OS=Shigella flexneri seroty... [more]
EFTU2_SHESR2.096e-1329.22Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU2_SHEB92.096e-1329.68Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]
EFTU2_SHEB52.096e-1329.68Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]
EFTU2_PHOPR2.096e-1328.11Elongation factor Tu 2 OS=Photobacterium profundum... [more]
EFTU2_ECOUT2.096e-1330.05Elongation factor Tu 2 OS=Escherichia coli (strain... [more]
EFTU2_ECOLC2.096e-1330.05Elongation factor Tu 2 OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884651 ID=CV884651; Name=CV884651; organism=Citrus sinensis; type=EST; length=900bp
TTTATCAACTTACCAAAAAAAAACTCTGATATAAAACCAAATTCAGAGAA
TTAAAATGAAGTCCCGTAAAACAAACTAAAACACGACAAAAATAGCATAA
ACAGAGAAAATAAAAGCTAACTATAGCAGATAGATCCCAAAAAACTCCTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATGTCACCAC
CATACCAGGCTTGAGGACACCGGTCTCAACGCGACCCACTGGGACGGTTC
CAATGCCACCAATCTTGTACACGTCCTGGAGTGGCAGACGAAGGGGCTTG
TCTGAGGGCCTCTTCGGCTCATTGATATTGTCCAGAGCGTCCAGCAGGGT
TGGACCCTTGTACCAGTCAAGGTTGGTAGACCTCTCAATCATGTTGTCCC
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