CV884640

Overview
NameCV884640
Unique NameCV884640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_SHIFL (Divalent-cation tolerance protein cutA OS=Shigella flexneri GN=cutA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_SHIF8 (Divalent-cation tolerance protein cutA OS=Shigella flexneri serotype 5b (strain 8401) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_SHIDS (Divalent-cation tolerance protein cutA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_SHIB3 (Divalent-cation tolerance protein cutA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOUT (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain UTI89 / UPEC) GN=cutA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOSM (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOSE (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain SE11) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLU (Divalent-cation tolerance protein cutA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLI (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain K12) GN=cutA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CV884640 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLC (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 3 
Query:   75 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 407
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
The following BLAST results are available for this feature:
BLAST of CV884640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_SHIFL4.525e-1836.94Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIF84.525e-1836.94Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIDS4.525e-1836.94Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_SHIB34.525e-1836.94Divalent-cation tolerance protein cutA OS=Shigella... [more]
CUTA_ECOUT4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOSM4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOSE4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLU4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLI4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOLC4.525e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884640 ID=CV884640; Name=CV884640; organism=Citrus sinensis; type=EST; length=637bp
GTTCCGCTCCTTCTCTCCCGTTTTTCGGATCAAAGTTTAGTAACCAAGCT
CGCGCGAGTAGTAACACGATCAAAATGGAAGGCAACAGCAAAACTGTACC
AAGTATTGTAGTTTATGTCACCGTTCCTAACAAAGAAGCAGGAAAGAAAC
TGGCTGAAAGCATAGTGAAAGCAAAACTTGCAGCATGTGTGAATCGAGTG
CCAGGTATTGAATCTGTTTACGAGTGGAAGGGAGAGATCCAGACAGATGC
TGAAGAACTTCTTATTATAAAGACTAGGCAATCCCTTTTGGAAACTCTGA
CAGAGCATGTCAAGGCAAATCATGAATATGATGTGCCAGAAGTAATTGCC
TTGCCCATCACTGGTGGCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAG
TACAAGGGACTGACTCCCGCGGATGTAGTGTGATGTAGTGTGTGGACGCT
GTAACTGATAAGCTCCTTTTGTTGTTGGGTTGAGTGTGCAGATGGTACTA
CTAGAATAAAGTTTGTATATTTTATAATCGAACTGGAACATATCGTGATG
AATTCTATGTTGGCAAAACTTGTGAGATGATGTATGCCCTTAGTTTTCCG
AAAACATGCTATTCTACCATTTTCACTCTGTTAAAAA
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