CV884633

Overview
NameCV884633
Unique NameCV884633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length158
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig925 contig Csv1_Contig925:40..196. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.637e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.924e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.924e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.924e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.924e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.924e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.513e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.282e-14
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLI 44
[Close]
BLAST of CV884633 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.598e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = -3 
Query:   10 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 126
            KTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLI
Sbjct:    6 KTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLI 44
The following BLAST results are available for this feature:
BLAST of CV884633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
UBIQ_ASPOF8.637e-15100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH8.637e-15100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_YEAST1.924e-1497.44Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO1.924e-1497.44Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.924e-1497.44Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.924e-1497.44Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.924e-1497.44Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CHLRE2.513e-1497.44Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR3.282e-1497.44Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBL1_ORYSJ5.598e-1494.87Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884633 ID=CV884633; Name=CV884633; organism=Citrus sinensis; type=EST; length=158bp
TGCCAGCAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCT
GGATCTTGGCTTTTACATTATCAATGGTGTCAGAGCTTTCGACCTCAAGG
GTTATGGTCTTGCCGGTGAGAGTCTTGAAAGGCTTGAAAGCAAAGTGAAC
AAGATCCT
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